miRNA display CGI


Results 1 - 20 of 600 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 3' -56.5 NC_001847.1 + 91633 0.66 0.855504
Target:  5'- gCUGCGGCuGCggcUGCGgcucUUGCUUCGC-CCu -3'
miRNA:   3'- -GACGCCG-CGa--AUGC----AACGGGGUGuGG- -5'
6494 3' -56.5 NC_001847.1 + 71768 0.66 0.855504
Target:  5'- gCUGCGGCgGCUcguggACGaguacacagUGCCgCACGCg -3'
miRNA:   3'- -GACGCCG-CGAa----UGCa--------ACGGgGUGUGg -5'
6494 3' -56.5 NC_001847.1 + 96860 0.66 0.847597
Target:  5'- -gGCGGCGgUggGCGgcGgUCCGCGCUg -3'
miRNA:   3'- gaCGCCGCgAa-UGCaaCgGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 33864 0.66 0.847597
Target:  5'- aCUGCGcGCGCUucuUGCaggaGgcGCCgCCGCGCg -3'
miRNA:   3'- -GACGC-CGCGA---AUG----CaaCGG-GGUGUGg -5'
6494 3' -56.5 NC_001847.1 + 6904 0.66 0.847597
Target:  5'- -gGCGaGCGCgcGCGc-GCCCUGCGCg -3'
miRNA:   3'- gaCGC-CGCGaaUGCaaCGGGGUGUGg -5'
6494 3' -56.5 NC_001847.1 + 55533 0.66 0.847597
Target:  5'- -cGCGGgGCgaccgGCGacaacGCCCCcgGCGCCc -3'
miRNA:   3'- gaCGCCgCGaa---UGCaa---CGGGG--UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 133598 0.66 0.852365
Target:  5'- -cGCGGCGCgucuucgGCCCgGgCGCCu -3'
miRNA:   3'- gaCGCCGCGaaugcaaCGGGgU-GUGG- -5'
6494 3' -56.5 NC_001847.1 + 42151 0.66 0.847597
Target:  5'- -cGCcuccaGCGCUcGCGUgugGCUgCACGCCg -3'
miRNA:   3'- gaCGc----CGCGAaUGCAa--CGGgGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 2420 0.66 0.847597
Target:  5'- gCUGCGcCGCUU-CGgccaaGCUUCGCGCCa -3'
miRNA:   3'- -GACGCcGCGAAuGCaa---CGGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 43259 0.66 0.847597
Target:  5'- -cGCGGCGCccGgGggGCaCCUGCugCg -3'
miRNA:   3'- gaCGCCGCGaaUgCaaCG-GGGUGugG- -5'
6494 3' -56.5 NC_001847.1 + 49532 0.66 0.847597
Target:  5'- -cGcCGGCGCUUugGcuuuagcgccuUUGCCggCGCGCCc -3'
miRNA:   3'- gaC-GCCGCGAAugC-----------AACGGg-GUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 17681 0.66 0.844379
Target:  5'- ---aGGCGCgcaccgccagugGCGUUGUCggCCACGCCg -3'
miRNA:   3'- gacgCCGCGaa----------UGCAACGG--GGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 88909 0.66 0.847597
Target:  5'- -gGCGGCuccCUUGCGcgcgcgcgGCUCUGCGCCa -3'
miRNA:   3'- gaCGCCGc--GAAUGCaa------CGGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 130260 0.66 0.847597
Target:  5'- -aGCGGCGCg---GggGCCCUGCcgcuGCCc -3'
miRNA:   3'- gaCGCCGCGaaugCaaCGGGGUG----UGG- -5'
6494 3' -56.5 NC_001847.1 + 120354 0.66 0.848397
Target:  5'- -gGCGGCGCUacaACGggaccgucgagcugcUGCgcuaCCACGCCg -3'
miRNA:   3'- gaCGCCGCGAa--UGCa--------------ACGg---GGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 5813 0.66 0.855504
Target:  5'- uUGCgcuuGGCGCgccgggUGCGUgcaGCaCCCAC-CCg -3'
miRNA:   3'- gACG----CCGCGa-----AUGCAa--CG-GGGUGuGG- -5'
6494 3' -56.5 NC_001847.1 + 50271 0.66 0.850784
Target:  5'- gCUG-GGCGCgUACGUggGCCgCCuagccgggcuaguggGCGCCa -3'
miRNA:   3'- -GACgCCGCGaAUGCAa-CGG-GG---------------UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 64116 0.66 0.847597
Target:  5'- -cGCGGCGCcagacgcgUGCGcgGCCgCCGUACUg -3'
miRNA:   3'- gaCGCCGCGa-------AUGCaaCGG-GGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 100644 0.66 0.855504
Target:  5'- gCUGCGGCGCcagg---GCCgCGCugCu -3'
miRNA:   3'- -GACGCCGCGaaugcaaCGGgGUGugG- -5'
6494 3' -56.5 NC_001847.1 + 9529 0.66 0.854722
Target:  5'- -gGCGGCGCgcuaGCGUccgugcgUGCgCCAgCGCUg -3'
miRNA:   3'- gaCGCCGCGaa--UGCA-------ACGgGGU-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.