miRNA display CGI


Results 1 - 20 of 600 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 3' -56.5 NC_001847.1 + 133428 0.74 0.414586
Target:  5'- -cGCGGCGCggcgGCGgcugaucgUGCUCgACGCCg -3'
miRNA:   3'- gaCGCCGCGaa--UGCa-------ACGGGgUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 119886 0.75 0.37228
Target:  5'- gCUGCGGCGaucgcgUGCGUgGCCgCCGcCGCCg -3'
miRNA:   3'- -GACGCCGCga----AUGCAaCGG-GGU-GUGG- -5'
6494 3' -56.5 NC_001847.1 + 105575 0.75 0.37228
Target:  5'- -gGCGGCGCcgGCGccggcGCCCC-CGCCg -3'
miRNA:   3'- gaCGCCGCGaaUGCaa---CGGGGuGUGG- -5'
6494 3' -56.5 NC_001847.1 + 16005 0.75 0.378024
Target:  5'- -cGCGGCGCcgACGagcucgccaucgacgGCCCCAUGCCu -3'
miRNA:   3'- gaCGCCGCGaaUGCaa-------------CGGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 106126 0.75 0.388847
Target:  5'- -cGCGGCGCggGCGccgcUGCCgCCgGCGCCg -3'
miRNA:   3'- gaCGCCGCGaaUGCa---ACGG-GG-UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 71926 0.75 0.40589
Target:  5'- -cGCGGCGCgcgcacGCGUaaacgGCgCCGCGCCg -3'
miRNA:   3'- gaCGCCGCGaa----UGCAa----CGgGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 19648 0.74 0.414586
Target:  5'- -cGCGGcCGCUUGCGg-GCCCgGcCGCCg -3'
miRNA:   3'- gaCGCC-GCGAAUGCaaCGGGgU-GUGG- -5'
6494 3' -56.5 NC_001847.1 + 49950 0.74 0.414586
Target:  5'- -cGUGGCGC--GCGgUGCCgCGCACCu -3'
miRNA:   3'- gaCGCCGCGaaUGCaACGGgGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 109672 0.74 0.414586
Target:  5'- -gGCGGCGCUUGCuUUGgCCCGC-CUu -3'
miRNA:   3'- gaCGCCGCGAAUGcAACgGGGUGuGG- -5'
6494 3' -56.5 NC_001847.1 + 80646 0.75 0.364179
Target:  5'- -gGCGGCGCUcGCGggaGaCCCgGCGCCg -3'
miRNA:   3'- gaCGCCGCGAaUGCaa-C-GGGgUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 45527 0.76 0.356201
Target:  5'- -gGCGGCGCggACGggGCCgugCCGCGCa -3'
miRNA:   3'- gaCGCCGCGaaUGCaaCGG---GGUGUGg -5'
6494 3' -56.5 NC_001847.1 + 90194 0.76 0.348346
Target:  5'- gCUGCGGCGCgc-CGUcGCCCagcccgaGCGCCc -3'
miRNA:   3'- -GACGCCGCGaauGCAaCGGGg------UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 54593 0.81 0.169142
Target:  5'- -gGCGGCGCUgGCGgcgcGCgCCCGCGCCg -3'
miRNA:   3'- gaCGCCGCGAaUGCaa--CG-GGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 56833 0.78 0.263841
Target:  5'- -cGCGGCGCgcGCGccGCgCCGCGCCg -3'
miRNA:   3'- gaCGCCGCGaaUGCaaCGgGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 61270 0.76 0.318175
Target:  5'- -cGCGGCGCgcGCGg-GCgCCGCGCCg -3'
miRNA:   3'- gaCGCCGCGaaUGCaaCGgGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 117269 0.76 0.318175
Target:  5'- uCUGCGGgGCcgccguUUugGggcGCCCCGCGCCc -3'
miRNA:   3'- -GACGCCgCG------AAugCaa-CGGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 69632 0.76 0.340615
Target:  5'- -gGCGGCcgcacuGCgcGCGccGCCCCACACCg -3'
miRNA:   3'- gaCGCCG------CGaaUGCaaCGGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 87405 0.76 0.340615
Target:  5'- uUGC-GCGCggGCGggGCCCCGCccGCCg -3'
miRNA:   3'- gACGcCGCGaaUGCaaCGGGGUG--UGG- -5'
6494 3' -56.5 NC_001847.1 + 25935 0.76 0.348346
Target:  5'- -cGcCGGCGCUUG-GUUGCCCgauCGCACCc -3'
miRNA:   3'- gaC-GCCGCGAAUgCAACGGG---GUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 36880 0.76 0.348346
Target:  5'- -cGCGGgGCUgcuggcgacUACGcUGCCCCGcCGCCa -3'
miRNA:   3'- gaCGCCgCGA---------AUGCaACGGGGU-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.