Results 1 - 20 of 600 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 82444 | 0.66 | 0.885033 |
Target: 5'- -cGgGGCGCUUggcuccaggcGCGgcggGCCCgGCcCCg -3' miRNA: 3'- gaCgCCGCGAA----------UGCaa--CGGGgUGuGG- -5' |
|||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 98479 | 0.66 | 0.877977 |
Target: 5'- -gGgGGCGCau-CGaaGCCCC-CACCu -3' miRNA: 3'- gaCgCCGCGaauGCaaCGGGGuGUGG- -5' |
|||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 109899 | 0.66 | 0.877977 |
Target: 5'- gCUGUaccGGCaGCU--CGUUGUCCCcgcgACGCCg -3' miRNA: 3'- -GACG---CCG-CGAauGCAACGGGG----UGUGG- -5' |
|||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 17215 | 1.12 | 0.001397 |
Target: 5'- uCUGCGGCGCUUACGUUGCCCCACACCg -3' miRNA: 3'- -GACGCCGCGAAUGCAACGGGGUGUGG- -5' |
|||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 95296 | 0.66 | 0.885033 |
Target: 5'- uUGCGGcCGCUgGCGccuccagGCgCgGCGCCg -3' miRNA: 3'- gACGCC-GCGAaUGCaa-----CGgGgUGUGG- -5' |
|||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 75731 | 0.66 | 0.885033 |
Target: 5'- -cGgGGCGCa-GCGaUGaCCgCCGCGCCu -3' miRNA: 3'- gaCgCCGCGaaUGCaAC-GG-GGUGUGG- -5' |
|||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 96422 | 0.66 | 0.885033 |
Target: 5'- -gGCGGgGCcgGCGgcaggcgcgGCCCCggagGCACUg -3' miRNA: 3'- gaCGCCgCGaaUGCaa-------CGGGG----UGUGG- -5' |
|||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 44937 | 0.66 | 0.885033 |
Target: 5'- gCUGgGGCGCUcgggcugggcgACGgcGCgCCGCAgCa -3' miRNA: 3'- -GACgCCGCGAa----------UGCaaCGgGGUGUgG- -5' |
|||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 60821 | 0.66 | 0.880826 |
Target: 5'- cCUGCGGCaGCggcacCGUcaugggaaacagcaGCUCCGCGCCc -3' miRNA: 3'- -GACGCCG-CGaau--GCAa-------------CGGGGUGUGG- -5' |
|||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 106720 | 0.66 | 0.877977 |
Target: 5'- -gGCGGCGUgcgccaggGCGcuaaGCCCCGC-CUg -3' miRNA: 3'- gaCGCCGCGaa------UGCaa--CGGGGUGuGG- -5' |
|||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 125288 | 0.66 | 0.877977 |
Target: 5'- uUGUaGGCGU--GCGUcGgUCCACACCa -3' miRNA: 3'- gACG-CCGCGaaUGCAaCgGGGUGUGG- -5' |
|||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 66821 | 0.66 | 0.884338 |
Target: 5'- -aGCGGCGCgUUcugcaccuguuugACG-UGCCCacgauCACCa -3' miRNA: 3'- gaCGCCGCG-AA-------------UGCaACGGGgu---GUGG- -5' |
|||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 80546 | 0.66 | 0.885033 |
Target: 5'- --uCGGCGCggGCGcgcGCCgCCAgCGCCg -3' miRNA: 3'- gacGCCGCGaaUGCaa-CGG-GGU-GUGG- -5' |
|||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 87276 | 0.66 | 0.877977 |
Target: 5'- -cGCGcGCGC-UGCGc-GCgCCCGCGCa -3' miRNA: 3'- gaCGC-CGCGaAUGCaaCG-GGGUGUGg -5' |
|||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 126272 | 0.66 | 0.885033 |
Target: 5'- -cGCuGGCGCUc-UGggGCCCaauuGCGCCa -3' miRNA: 3'- gaCG-CCGCGAauGCaaCGGGg---UGUGG- -5' |
|||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 16851 | 0.66 | 0.885033 |
Target: 5'- -gGCGGCGCUcgagGCGagcggGCUCCuggagagacauCACCa -3' miRNA: 3'- gaCGCCGCGAa---UGCaa---CGGGGu----------GUGG- -5' |
|||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 28451 | 0.66 | 0.877977 |
Target: 5'- -cGCGGCGCcgcGCGacggGCCgC-CGCCg -3' miRNA: 3'- gaCGCCGCGaa-UGCaa--CGGgGuGUGG- -5' |
|||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 5186 | 0.66 | 0.877977 |
Target: 5'- -cGCGGCGCgggaGaaGCCCU-CGCCg -3' miRNA: 3'- gaCGCCGCGaaugCaaCGGGGuGUGG- -5' |
|||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 104939 | 0.66 | 0.885033 |
Target: 5'- -cGCGGCuucgGCgcGCGc-GCCgCGCACCg -3' miRNA: 3'- gaCGCCG----CGaaUGCaaCGGgGUGUGG- -5' |
|||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 47422 | 0.66 | 0.885033 |
Target: 5'- -gGCGGCGuCUgcgACGUcgucgGCUUCGcCGCCg -3' miRNA: 3'- gaCGCCGC-GAa--UGCAa----CGGGGU-GUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home