miRNA display CGI


Results 21 - 40 of 600 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 3' -56.5 NC_001847.1 + 120354 0.66 0.848397
Target:  5'- -gGCGGCGCUacaACGggaccgucgagcugcUGCgcuaCCACGCCg -3'
miRNA:   3'- gaCGCCGCGAa--UGCa--------------ACGg---GGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 133167 0.66 0.862446
Target:  5'- gCUGCccggggaGGCGCUgGCGgcGCCgCCcggcgaggacgaGCGCCg -3'
miRNA:   3'- -GACG-------CCGCGAaUGCaaCGG-GG------------UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 55533 0.66 0.847597
Target:  5'- -cGCGGgGCgaccgGCGacaacGCCCCcgGCGCCc -3'
miRNA:   3'- gaCGCCgCGaa---UGCaa---CGGGG--UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 74478 0.66 0.863207
Target:  5'- gCUGUgccgcgagGGCGCggACGcgGCCgCgCGCACCc -3'
miRNA:   3'- -GACG--------CCGCGaaUGCaaCGG-G-GUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 88909 0.66 0.847597
Target:  5'- -gGCGGCuccCUUGCGcgcgcgcgGCUCUGCGCCa -3'
miRNA:   3'- gaCGCCGc--GAAUGCaa------CGGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 49532 0.66 0.847597
Target:  5'- -cGcCGGCGCUUugGcuuuagcgccuUUGCCggCGCGCCc -3'
miRNA:   3'- gaC-GCCGCGAAugC-----------AACGGg-GUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 50271 0.66 0.850784
Target:  5'- gCUG-GGCGCgUACGUggGCCgCCuagccgggcuaguggGCGCCa -3'
miRNA:   3'- -GACgCCGCGaAUGCAa-CGG-GG---------------UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 50742 0.66 0.863207
Target:  5'- gCUGCGGCaCcgGC--UGCCCCgguuuggcGCGCCa -3'
miRNA:   3'- -GACGCCGcGaaUGcaACGGGG--------UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 131370 0.66 0.863207
Target:  5'- -gGCGGCGCggGCGaca-CCCGCgaggGCCu -3'
miRNA:   3'- gaCGCCGCGaaUGCaacgGGGUG----UGG- -5'
6494 3' -56.5 NC_001847.1 + 100644 0.66 0.855504
Target:  5'- gCUGCGGCGCcagg---GCCgCGCugCu -3'
miRNA:   3'- -GACGCCGCGaaugcaaCGGgGUGugG- -5'
6494 3' -56.5 NC_001847.1 + 103104 0.66 0.863207
Target:  5'- -aGCccGCGCggGCGccGuCCCCGCGCCc -3'
miRNA:   3'- gaCGc-CGCGaaUGCaaC-GGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 2420 0.66 0.847597
Target:  5'- gCUGCGcCGCUU-CGgccaaGCUUCGCGCCa -3'
miRNA:   3'- -GACGCcGCGAAuGCaa---CGGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 64021 0.66 0.863207
Target:  5'- -gGCGGCGgg-ACGggcuUGCCCgcgguuCACGCCu -3'
miRNA:   3'- gaCGCCGCgaaUGCa---ACGGG------GUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 28836 0.66 0.855504
Target:  5'- gUGCGGCuGCUagaacGCGcgGCCgCGCGCg -3'
miRNA:   3'- gACGCCG-CGAa----UGCaaCGGgGUGUGg -5'
6494 3' -56.5 NC_001847.1 + 17681 0.66 0.844379
Target:  5'- ---aGGCGCgcaccgccagugGCGUUGUCggCCACGCCg -3'
miRNA:   3'- gacgCCGCGaa----------UGCAACGG--GGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 91633 0.66 0.855504
Target:  5'- gCUGCGGCuGCggcUGCGgcucUUGCUUCGC-CCu -3'
miRNA:   3'- -GACGCCG-CGa--AUGC----AACGGGGUGuGG- -5'
6494 3' -56.5 NC_001847.1 + 63760 0.66 0.855504
Target:  5'- -gGCGGCGCggGCcagGCCCgGagACCg -3'
miRNA:   3'- gaCGCCGCGaaUGcaaCGGGgUg-UGG- -5'
6494 3' -56.5 NC_001847.1 + 134045 0.66 0.855504
Target:  5'- -gGCGGCGCcgccCGcgGCCgCgGCGCCc -3'
miRNA:   3'- gaCGCCGCGaau-GCaaCGG-GgUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 77534 0.66 0.863207
Target:  5'- cCUGCGaGCGCgaggGCGUggcGCaCCCucguGCGCUu -3'
miRNA:   3'- -GACGC-CGCGaa--UGCAa--CG-GGG----UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 59962 0.66 0.863207
Target:  5'- -cGUGGCGUcgUACGUgacgaugGUCCCgACGCg -3'
miRNA:   3'- gaCGCCGCGa-AUGCAa------CGGGG-UGUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.