miRNA display CGI


Results 21 - 40 of 600 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 3' -56.5 NC_001847.1 + 3213 0.72 0.526961
Target:  5'- -cGcCGGCGC--ACG-UGCCuCCGCGCCg -3'
miRNA:   3'- gaC-GCCGCGaaUGCaACGG-GGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 3313 0.75 0.388847
Target:  5'- -cGCGGCGCggGCGccgcUGCCgCCgGCGCCg -3'
miRNA:   3'- gaCGCCGCGaaUGCa---ACGG-GG-UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 3633 0.68 0.768499
Target:  5'- -cGCGGCGCgcgUACaccagGUCCaccaGCGCCg -3'
miRNA:   3'- gaCGCCGCGa--AUGcaa--CGGGg---UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 3815 0.7 0.648858
Target:  5'- -gGCGGCgGCggcGCGcUGCCgggCCACGCCu -3'
miRNA:   3'- gaCGCCG-CGaa-UGCaACGG---GGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 3835 0.68 0.758981
Target:  5'- -cGUGGCGUUguucGCGccGCCCCagacguagacgGCGCCg -3'
miRNA:   3'- gaCGCCGCGAa---UGCaaCGGGG-----------UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 3893 0.68 0.768499
Target:  5'- -cGCGGCGCcgcgGCGUaGCCagcgcggGCGCCg -3'
miRNA:   3'- gaCGCCGCGaa--UGCAaCGGgg-----UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 3998 0.69 0.739614
Target:  5'- -cGCGGCcccGCgggGCGccggGCCCgGCGCCc -3'
miRNA:   3'- gaCGCCG---CGaa-UGCaa--CGGGgUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 4036 0.69 0.739614
Target:  5'- -cGCGGggcCGCUUugGUUcuggucccgGCCCCAguCCc -3'
miRNA:   3'- gaCGCC---GCGAAugCAA---------CGGGGUguGG- -5'
6494 3' -56.5 NC_001847.1 + 4639 0.67 0.839494
Target:  5'- -cGcCGGCGCUcGCGcgccucaGCCCgaCGCGCCg -3'
miRNA:   3'- gaC-GCCGCGAaUGCaa-----CGGG--GUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 4876 0.7 0.669344
Target:  5'- -gGCGGCGggcaGCGgcaggGcCCCCGCGCCg -3'
miRNA:   3'- gaCGCCGCgaa-UGCaa---C-GGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 5186 0.66 0.877977
Target:  5'- -cGCGGCGCgggaGaaGCCCU-CGCCg -3'
miRNA:   3'- gaCGCCGCGaaugCaaCGGGGuGUGG- -5'
6494 3' -56.5 NC_001847.1 + 5476 0.67 0.831201
Target:  5'- uCUGCGGCG---GCGgcagcgGCCgCCGCaACCu -3'
miRNA:   3'- -GACGCCGCgaaUGCaa----CGG-GGUG-UGG- -5'
6494 3' -56.5 NC_001847.1 + 5781 0.71 0.597549
Target:  5'- -cGCGGCGuCUaGCcccggGCCCgGCACCg -3'
miRNA:   3'- gaCGCCGC-GAaUGcaa--CGGGgUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 5813 0.66 0.855504
Target:  5'- uUGCgcuuGGCGCgccgggUGCGUgcaGCaCCCAC-CCg -3'
miRNA:   3'- gACG----CCGCGa-----AUGCAa--CG-GGGUGuGG- -5'
6494 3' -56.5 NC_001847.1 + 6120 0.67 0.839494
Target:  5'- -cGCGGCGCgaGC---GCCUCGcCGCCa -3'
miRNA:   3'- gaCGCCGCGaaUGcaaCGGGGU-GUGG- -5'
6494 3' -56.5 NC_001847.1 + 6326 0.67 0.839494
Target:  5'- -cGCGGCcacgUACGcgggUGCCCCggcggcaaccGCGCCg -3'
miRNA:   3'- gaCGCCGcga-AUGCa---ACGGGG----------UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 6447 0.71 0.60779
Target:  5'- -gGCGGCGCggcgacggcgUACGUggccaggcaGUCCCGCACg -3'
miRNA:   3'- gaCGCCGCGa---------AUGCAa--------CGGGGUGUGg -5'
6494 3' -56.5 NC_001847.1 + 6756 0.68 0.776961
Target:  5'- uCUGCGGUGCggccggUGCGagGCgCCAgcugcuccguggcCACCa -3'
miRNA:   3'- -GACGCCGCGa-----AUGCaaCGgGGU-------------GUGG- -5'
6494 3' -56.5 NC_001847.1 + 6859 0.74 0.414586
Target:  5'- -gGCGGCGCUUGCuUUGgCCCGC-CUu -3'
miRNA:   3'- gaCGCCGCGAAUGcAACgGGGUGuGG- -5'
6494 3' -56.5 NC_001847.1 + 6904 0.66 0.847597
Target:  5'- -gGCGaGCGCgcGCGc-GCCCUGCGCg -3'
miRNA:   3'- gaCGC-CGCGaaUGCaaCGGGGUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.