miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 70502 0.66 0.777895
Target:  5'- -uGACGAcGGCGGGcaucAAGCAGCgGCu -3'
miRNA:   3'- agUUGUUcCCGCCCc---UUCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 58025 0.66 0.768499
Target:  5'- gCAACAAGGGCGGcccgcugcuGGcgacccggcuGAcGCAGCuCGCGc -3'
miRNA:   3'- aGUUGUUCCCGCC---------CC----------UU-CGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 43810 0.66 0.777895
Target:  5'- cCGGuCGAGGGCGac--GGCGGCCGCu -3'
miRNA:   3'- aGUU-GUUCCCGCcccuUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 15787 0.66 0.787159
Target:  5'- gCGGCAAGcgccgcgcGGC-GGGAGGCGGCgGUg -3'
miRNA:   3'- aGUUGUUC--------CCGcCCCUUCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 8134 0.66 0.768499
Target:  5'- ---cCAGGGGCGGGc--GguGCUGCGc -3'
miRNA:   3'- aguuGUUCCCGCCCcuuCguCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 5982 0.66 0.777895
Target:  5'- cUCGGCuuu-GCGGGG-GGCAGCCGa- -3'
miRNA:   3'- -AGUUGuuccCGCCCCuUCGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 47688 0.66 0.777895
Target:  5'- aCGACGAGGuccuCGGcGuuGGCGGCCGCc -3'
miRNA:   3'- aGUUGUUCCc---GCC-CcuUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 127877 0.66 0.777895
Target:  5'- aCGAUggGGGgGGGGAGGgGGaaaaaagGCAa -3'
miRNA:   3'- aGUUGuuCCCgCCCCUUCgUCgg-----CGU- -5'
6494 5' -58.2 NC_001847.1 + 41084 0.66 0.777895
Target:  5'- --cGCAGGGuGuCGGGGGugauGGUAGCCGg- -3'
miRNA:   3'- aguUGUUCC-C-GCCCCU----UCGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 106786 0.66 0.777895
Target:  5'- --cGCGAGGGCGccGGggGCccgGGCgCGCGg -3'
miRNA:   3'- aguUGUUCCCGCc-CCuuCG---UCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 90487 0.66 0.768499
Target:  5'- gUCAcgguGCA--GGCGGGGcAGCAGCCu-- -3'
miRNA:   3'- -AGU----UGUucCCGCCCCuUCGUCGGcgu -5'
6494 5' -58.2 NC_001847.1 + 12492 0.66 0.787159
Target:  5'- gCGGCGGGGGCGGccaagaacccGGGccagacgacgaaGGCGacgacGCCGCAg -3'
miRNA:   3'- aGUUGUUCCCGCC----------CCU------------UCGU-----CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 129136 0.67 0.739614
Target:  5'- -gGAgAAGGGUGaGGG--GCGGCCGUg -3'
miRNA:   3'- agUUgUUCCCGC-CCCuuCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 72400 0.67 0.729784
Target:  5'- -gGACGcGGGCcccgacgcGGGGAcGGCcacGGCCGCAa -3'
miRNA:   3'- agUUGUuCCCG--------CCCCU-UCG---UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 35441 0.67 0.739614
Target:  5'- -gAGCAcGGuGCGGcGcGAcGCGGCCGCGg -3'
miRNA:   3'- agUUGUuCC-CGCC-C-CUuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 55455 0.67 0.739614
Target:  5'- -uGGCGccGGCGGGGc-GCGcGCCGCGc -3'
miRNA:   3'- agUUGUucCCGCCCCuuCGU-CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 35248 0.67 0.739614
Target:  5'- cCGGCGGGcGcGCGGcGGAGauCAGCCGCGc -3'
miRNA:   3'- aGUUGUUC-C-CGCC-CCUUc-GUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 131439 0.67 0.739614
Target:  5'- gCGGCGGccGCGGGGcccGCGGCCGUg -3'
miRNA:   3'- aGUUGUUccCGCCCCuu-CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 132603 0.67 0.729784
Target:  5'- cCGGCcc-GGCGGcGGGAGC-GCCGCc -3'
miRNA:   3'- aGUUGuucCCGCC-CCUUCGuCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 16617 0.67 0.739614
Target:  5'- gCGugGucuuuGGGgGGGGgcGCGGCgGCu -3'
miRNA:   3'- aGUugUu----CCCgCCCCuuCGUCGgCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.