miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 38279 0.66 0.768499
Target:  5'- --cGCGcGGGCGGcGGcAGGUGGCgGCAg -3'
miRNA:   3'- aguUGUuCCCGCC-CC-UUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 70502 0.66 0.777895
Target:  5'- -uGACGAcGGCGGGcaucAAGCAGCgGCu -3'
miRNA:   3'- agUUGUUcCCGCCCc---UUCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 58025 0.66 0.768499
Target:  5'- gCAACAAGGGCGGcccgcugcuGGcgacccggcuGAcGCAGCuCGCGc -3'
miRNA:   3'- aGUUGUUCCCGCC---------CC----------UU-CGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 70274 0.66 0.749349
Target:  5'- aCcGCGAGGacgcgcgccugGCGGGGucGCGGCgCGCc -3'
miRNA:   3'- aGuUGUUCC-----------CGCCCCuuCGUCG-GCGu -5'
6494 5' -58.2 NC_001847.1 + 42372 0.66 0.777895
Target:  5'- cCAGCGccucGGG-GGGGAugAGCucgcggAGCCGCAu -3'
miRNA:   3'- aGUUGUu---CCCgCCCCU--UCG------UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 59026 0.66 0.768499
Target:  5'- gCGACGGuGGCGGGu--GCGGCgGCGg -3'
miRNA:   3'- aGUUGUUcCCGCCCcuuCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 32423 0.66 0.749349
Target:  5'- cCAGCcgcuuuucGGGGCGGuGGcccAGGCGcuGCCGCAg -3'
miRNA:   3'- aGUUGu-------UCCCGCC-CC---UUCGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 120504 0.66 0.787159
Target:  5'- gCAGCGAGcGGCGcGcGAGC-GCCGCGg -3'
miRNA:   3'- aGUUGUUC-CCGCcCcUUCGuCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 94155 0.66 0.787159
Target:  5'- gCGACAucucGcGGCGGcugcuGGgcGCGGCCGCc -3'
miRNA:   3'- aGUUGUu---C-CCGCC-----CCuuCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 19791 0.66 0.787159
Target:  5'- aUCAGCAucGuCGGcGGAGGCGGUgGCGg -3'
miRNA:   3'- -AGUUGUucCcGCC-CCUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 8134 0.66 0.768499
Target:  5'- ---cCAGGGGCGGGc--GguGCUGCGc -3'
miRNA:   3'- aguuGUUCCCGCCCcuuCguCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 13332 0.66 0.768499
Target:  5'- cCGGCAcGGGCGGcG-AGCAGgCGCc -3'
miRNA:   3'- aGUUGUuCCCGCCcCuUCGUCgGCGu -5'
6494 5' -58.2 NC_001847.1 + 124453 0.66 0.787159
Target:  5'- -aGGCcGGcGGUGcGGGAAGCGGCUGg- -3'
miRNA:   3'- agUUGuUC-CCGC-CCCUUCGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 74385 0.66 0.787159
Target:  5'- ----aGAGGcGCuGGGGGAccgcGCGGCCGCc -3'
miRNA:   3'- aguugUUCC-CG-CCCCUU----CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 25064 0.66 0.777895
Target:  5'- aCGAUggGGGgGGGGAGGgGGaaaaaagGCAa -3'
miRNA:   3'- aGUUGuuCCCgCCCCUUCgUCgg-----CGU- -5'
6494 5' -58.2 NC_001847.1 + 120839 0.66 0.768499
Target:  5'- gCAGCGGGaGCGGGGccGCGacGCCGgAg -3'
miRNA:   3'- aGUUGUUCcCGCCCCuuCGU--CGGCgU- -5'
6494 5' -58.2 NC_001847.1 + 15787 0.66 0.787159
Target:  5'- gCGGCAAGcgccgcgcGGC-GGGAGGCGGCgGUg -3'
miRNA:   3'- aGUUGUUC--------CCGcCCCUUCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 58170 0.66 0.777895
Target:  5'- gCGACcgcGGCGGGGucGUcaaAGCCGCc -3'
miRNA:   3'- aGUUGuucCCGCCCCuuCG---UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 72592 0.66 0.768499
Target:  5'- gCGGCcgcGGCGGcagaaGggGCAGCCGCu -3'
miRNA:   3'- aGUUGuucCCGCCc----CuuCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 27128 0.66 0.775089
Target:  5'- uUCGACGuc-GCgaaacugccguccgGGGGgcGCAGCCGCGg -3'
miRNA:   3'- -AGUUGUuccCG--------------CCCCuuCGUCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.