miRNA display CGI


Results 1 - 20 of 313 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 84230 0.66 0.776961
Target:  5'- aCGGCcGGGGCcgccgcgGGGGAGGagGGCgGCGa -3'
miRNA:   3'- aGUUGuUCCCG-------CCCCUUCg-UCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 18953 0.66 0.749349
Target:  5'- gCGGCGuccGGGCGGcGAcgaccagcGCGGCCGCGg -3'
miRNA:   3'- aGUUGUu--CCCGCCcCUu-------CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 127877 0.66 0.777895
Target:  5'- aCGAUggGGGgGGGGAGGgGGaaaaaagGCAa -3'
miRNA:   3'- aGUUGuuCCCgCCCCUUCgUCgg-----CGU- -5'
6494 5' -58.2 NC_001847.1 + 58025 0.66 0.768499
Target:  5'- gCAACAAGGGCGGcccgcugcuGGcgacccggcuGAcGCAGCuCGCGc -3'
miRNA:   3'- aGUUGUUCCCGCC---------CC----------UU-CGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 41084 0.66 0.777895
Target:  5'- --cGCAGGGuGuCGGGGGugauGGUAGCCGg- -3'
miRNA:   3'- aguUGUUCC-C-GCCCCU----UCGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 32423 0.66 0.749349
Target:  5'- cCAGCcgcuuuucGGGGCGGuGGcccAGGCGcuGCCGCAg -3'
miRNA:   3'- aGUUGu-------UCCCGCC-CC---UUCGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 59026 0.66 0.768499
Target:  5'- gCGACGGuGGCGGGu--GCGGCgGCGg -3'
miRNA:   3'- aGUUGUUcCCGCCCcuuCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 38279 0.66 0.768499
Target:  5'- --cGCGcGGGCGGcGGcAGGUGGCgGCAg -3'
miRNA:   3'- aguUGUuCCCGCC-CC-UUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 8134 0.66 0.768499
Target:  5'- ---cCAGGGGCGGGc--GguGCUGCGc -3'
miRNA:   3'- aguuGUUCCCGCCCcuuCguCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 33554 0.66 0.749349
Target:  5'- ----gAAGaGGCGGcagacgccgcGGAGGCGGCCGUg -3'
miRNA:   3'- aguugUUC-CCGCC----------CCUUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 123727 0.66 0.758981
Target:  5'- gCAGCAGcGGCGGcGGcaucGGCGGCgCGCu -3'
miRNA:   3'- aGUUGUUcCCGCC-CCu---UCGUCG-GCGu -5'
6494 5' -58.2 NC_001847.1 + 42372 0.66 0.777895
Target:  5'- cCAGCGccucGGG-GGGGAugAGCucgcggAGCCGCAu -3'
miRNA:   3'- aGUUGUu---CCCgCCCCU--UCG------UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 120839 0.66 0.768499
Target:  5'- gCAGCGGGaGCGGGGccGCGacGCCGgAg -3'
miRNA:   3'- aGUUGUUCcCGCCCCuuCGU--CGGCgU- -5'
6494 5' -58.2 NC_001847.1 + 43810 0.66 0.777895
Target:  5'- cCGGuCGAGGGCGac--GGCGGCCGCu -3'
miRNA:   3'- aGUU-GUUCCCGCcccuUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 27128 0.66 0.775089
Target:  5'- uUCGACGuc-GCgaaacugccguccgGGGGgcGCAGCCGCGg -3'
miRNA:   3'- -AGUUGUuccCG--------------CCCCuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 70502 0.66 0.777895
Target:  5'- -uGACGAcGGCGGGcaucAAGCAGCgGCu -3'
miRNA:   3'- agUUGUUcCCGCCCc---UUCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 47688 0.66 0.777895
Target:  5'- aCGACGAGGuccuCGGcGuuGGCGGCCGCc -3'
miRNA:   3'- aGUUGUUCCc---GCC-CcuUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 5982 0.66 0.777895
Target:  5'- cUCGGCuuu-GCGGGG-GGCAGCCGa- -3'
miRNA:   3'- -AGUUGuuccCGCCCCuUCGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 106786 0.66 0.777895
Target:  5'- --cGCGAGGGCGccGGggGCccgGGCgCGCGg -3'
miRNA:   3'- aguUGUUCCCGCc-CCuuCG---UCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 70274 0.66 0.749349
Target:  5'- aCcGCGAGGacgcgcgccugGCGGGGucGCGGCgCGCc -3'
miRNA:   3'- aGuUGUUCC-----------CGCCCCuuCGUCG-GCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.