miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 131476 0.74 0.33301
Target:  5'- -aGAUggGGgacGCGGGGAAGCAGUaCGCGg -3'
miRNA:   3'- agUUGuuCC---CGCCCCUUCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 64930 0.76 0.23962
Target:  5'- cCAACGccGGCGGGGcGGGUGGCCGCu -3'
miRNA:   3'- aGUUGUucCCGCCCC-UUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 134507 0.76 0.23962
Target:  5'- gUCGGgccuCGGGGGCGGGGGgaGGCgcgGGCCGCGc -3'
miRNA:   3'- -AGUU----GUUCCCGCCCCU--UCG---UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 3024 0.76 0.250885
Target:  5'- cCAAUAGGGGCGGucAcgucugcgcgcccAGCAGCCGCAg -3'
miRNA:   3'- aGUUGUUCCCGCCccU-------------UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 100540 0.76 0.263841
Target:  5'- -aGugGGuGGGCGGGGAGcCGGCCGCGg -3'
miRNA:   3'- agUugUU-CCCGCCCCUUcGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 134843 0.76 0.263841
Target:  5'- cCGGCGGGGcGCGGGGAcGGCGcCCGCGc -3'
miRNA:   3'- aGUUGUUCC-CGCCCCU-UCGUcGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 97722 0.75 0.276679
Target:  5'- gUCGGCGGGGGCagaaGcGGAAGCGGCgGCGg -3'
miRNA:   3'- -AGUUGUUCCCGc---C-CCUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 130803 0.75 0.290012
Target:  5'- gCGGCcGGGGC--GGAGGCGGCCGCGg -3'
miRNA:   3'- aGUUGuUCCCGccCCUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 53091 0.74 0.32553
Target:  5'- cUCAGCGuucGGCGGGGcGGCGGcCCGCc -3'
miRNA:   3'- -AGUUGUuc-CCGCCCCuUCGUC-GGCGu -5'
6494 5' -58.2 NC_001847.1 + 102673 0.76 0.233862
Target:  5'- --cGCGAGGGCGGGGggGCGGg-GCGg -3'
miRNA:   3'- aguUGUUCCCGCCCCuuCGUCggCGU- -5'
6494 5' -58.2 NC_001847.1 + 128899 0.77 0.228221
Target:  5'- gCAAUgcuGGGGGCGGaGGGAGCAGUgGCGc -3'
miRNA:   3'- aGUUG---UUCCCGCC-CCUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 19189 0.77 0.222695
Target:  5'- aCGGCGGGGGCGGGGucuGUGGCC-CAg -3'
miRNA:   3'- aGUUGUUCCCGCCCCuu-CGUCGGcGU- -5'
6494 5' -58.2 NC_001847.1 + 62471 0.8 0.130772
Target:  5'- cUCAGCAGGGcCGGGGucgccggcGGGCGGCCGCGg -3'
miRNA:   3'- -AGUUGUUCCcGCCCC--------UUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 14132 0.78 0.182486
Target:  5'- -gGGCGAuGGGCGGGGcccgcgccuGGGCGGCCGCu -3'
miRNA:   3'- agUUGUU-CCCGCCCC---------UUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 124388 0.78 0.182486
Target:  5'- ----aGAGGGCGGGaGAGGgGGCCGCGg -3'
miRNA:   3'- aguugUUCCCGCCC-CUUCgUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 74485 0.78 0.191893
Target:  5'- --cGCGAGGGCGcGGAcGCGGCCGCGc -3'
miRNA:   3'- aguUGUUCCCGCcCCUuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 60293 0.78 0.196754
Target:  5'- aUCGGCAgcGGGGCGGcGGGcGGCAGCgCGCGc -3'
miRNA:   3'- -AGUUGU--UCCCGCC-CCU-UCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 103294 0.77 0.211986
Target:  5'- gCAGCAgcGGcGGCGGcGggGCGGCCGCGc -3'
miRNA:   3'- aGUUGU--UC-CCGCCcCuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 118673 0.77 0.211986
Target:  5'- -aGGC-AGGGCGGGGGuugGGCcgGGCCGCAg -3'
miRNA:   3'- agUUGuUCCCGCCCCU---UCG--UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 87912 0.77 0.219435
Target:  5'- --cACAGGGGCGGGGcguggggcugggcGCGGCCGCGc -3'
miRNA:   3'- aguUGUUCCCGCCCCuu-----------CGUCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.