miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 17250 1.09 0.001437
Target:  5'- cUCAACAAGGGCGGGGAAGCAGCCGCAg -3'
miRNA:   3'- -AGUUGUUCCCGCCCCUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 54546 0.85 0.063813
Target:  5'- -gGGCGGGGGCGGGGAAgacGCAGUCGCGc -3'
miRNA:   3'- agUUGUUCCCGCCCCUU---CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 47548 0.82 0.106037
Target:  5'- cCAGCAcggcGGGcGCGGGGAgcccGGCGGCCGCGc -3'
miRNA:   3'- aGUUGU----UCC-CGCCCCU----UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 32886 0.8 0.130772
Target:  5'- aCGGCGAGgccucgggggccGGCGGGGAAGCcggGGCCGCGg -3'
miRNA:   3'- aGUUGUUC------------CCGCCCCUUCG---UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 62471 0.8 0.130772
Target:  5'- cUCAGCAGGGcCGGGGucgccggcGGGCGGCCGCGg -3'
miRNA:   3'- -AGUUGUUCCcGCCCC--------UUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 66484 0.79 0.17349
Target:  5'- gUCGcccGCAGGGGCGGGGAGGCGGUg--- -3'
miRNA:   3'- -AGU---UGUUCCCGCCCCUUCGUCGgcgu -5'
6494 5' -58.2 NC_001847.1 + 124388 0.78 0.182486
Target:  5'- ----aGAGGGCGGGaGAGGgGGCCGCGg -3'
miRNA:   3'- aguugUUCCCGCCC-CUUCgUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 14132 0.78 0.182486
Target:  5'- -gGGCGAuGGGCGGGGcccgcgccuGGGCGGCCGCu -3'
miRNA:   3'- agUUGUU-CCCGCCCC---------UUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 21575 0.78 0.182486
Target:  5'- ----aGAGGGCGGGaGAGGgGGCCGCGg -3'
miRNA:   3'- aguugUUCCCGCCC-CUUCgUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 42544 0.78 0.191893
Target:  5'- cUCggUGAGGGCGaGGAcGCGGCCGCGu -3'
miRNA:   3'- -AGuuGUUCCCGCcCCUuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 112313 0.78 0.191893
Target:  5'- uUCGACAAcuaccucGGCGGGG-AGCGGCCGCc -3'
miRNA:   3'- -AGUUGUUc------CCGCCCCuUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 74485 0.78 0.191893
Target:  5'- --cGCGAGGGCGcGGAcGCGGCCGCGc -3'
miRNA:   3'- aguUGUUCCCGCcCCUuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 60293 0.78 0.196754
Target:  5'- aUCGGCAgcGGGGCGGcGGGcGGCAGCgCGCGc -3'
miRNA:   3'- -AGUUGU--UCCCGCC-CCU-UCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 481 0.77 0.211986
Target:  5'- gCAGCAgcGGcGGCGGcGggGCGGCCGCGc -3'
miRNA:   3'- aGUUGU--UC-CCGCCcCuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 118673 0.77 0.211986
Target:  5'- -aGGC-AGGGCGGGGGuugGGCcgGGCCGCAg -3'
miRNA:   3'- agUUGuUCCCGCCCCU---UCG--UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 103294 0.77 0.211986
Target:  5'- gCAGCAgcGGcGGCGGcGggGCGGCCGCGc -3'
miRNA:   3'- aGUUGU--UC-CCGCCcCuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 87912 0.77 0.219435
Target:  5'- --cACAGGGGCGGGGcguggggcugggcGCGGCCGCGc -3'
miRNA:   3'- aguUGUUCCCGCCCCuu-----------CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 19189 0.77 0.222695
Target:  5'- aCGGCGGGGGCGGGGucuGUGGCC-CAg -3'
miRNA:   3'- aGUUGUUCCCGCCCCuu-CGUCGGcGU- -5'
6494 5' -58.2 NC_001847.1 + 103031 0.77 0.222695
Target:  5'- cCGGCGGcGGGCGGGcc-GCAGCCGCGu -3'
miRNA:   3'- aGUUGUU-CCCGCCCcuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 67277 0.77 0.222695
Target:  5'- -aAACGAGGcgcGCGGGGAcuuGGUGGCCGCGg -3'
miRNA:   3'- agUUGUUCC---CGCCCCU---UCGUCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.