miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 69 0.69 0.597549
Target:  5'- -gGGCGGGGGCGGGGuGGgGGaugggCGCGg -3'
miRNA:   3'- agUUGUUCCCGCCCCuUCgUCg----GCGU- -5'
6494 5' -58.2 NC_001847.1 + 419 0.7 0.50733
Target:  5'- -gGGCccGGGGCGGGcGGGCGGCgGCGg -3'
miRNA:   3'- agUUGu-UCCCGCCCcUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 451 0.71 0.450481
Target:  5'- gCAGCAGcGGCGGcGGcGGCGGCgGCGg -3'
miRNA:   3'- aGUUGUUcCCGCC-CCuUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 481 0.77 0.211986
Target:  5'- gCAGCAgcGGcGGCGGcGggGCGGCCGCGc -3'
miRNA:   3'- aGUUGU--UC-CCGCCcCuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 804 0.7 0.556913
Target:  5'- cCGACGAGG-CGGGGGA-CGacGCCGCGg -3'
miRNA:   3'- aGUUGUUCCcGCCCCUUcGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 2323 0.69 0.597549
Target:  5'- cCAGCAcgcGGGCGGGc-AGCGGCgGCu -3'
miRNA:   3'- aGUUGUu--CCCGCCCcuUCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 3024 0.76 0.250885
Target:  5'- cCAAUAGGGGCGGucAcgucugcgcgcccAGCAGCCGCAg -3'
miRNA:   3'- aGUUGUUCCCGCCccU-------------UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 3311 0.67 0.729784
Target:  5'- uUCAGguAcaGCGGGuAGGCGGCCGCGc -3'
miRNA:   3'- -AGUUguUccCGCCCcUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 3972 0.71 0.459719
Target:  5'- gCGGCGAGGGCGccGGggGCcgGGCgCGCGg -3'
miRNA:   3'- aGUUGUUCCCGCc-CCuuCG--UCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 4852 0.73 0.37228
Target:  5'- gUCAaaacGCAGGGGaGGGGggGgGGCgGCGg -3'
miRNA:   3'- -AGU----UGUUCCCgCCCCuuCgUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 4976 0.71 0.497632
Target:  5'- ----gGGGGGCagcuGGGGugcGGCGGCCGCGg -3'
miRNA:   3'- aguugUUCCCG----CCCCu--UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 5542 0.67 0.709879
Target:  5'- cUCGcACcGGcGGCGGcGGcAGCAGCgGCAg -3'
miRNA:   3'- -AGU-UGuUC-CCGCC-CCuUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 5982 0.66 0.777895
Target:  5'- cUCGGCuuu-GCGGGG-GGCAGCCGa- -3'
miRNA:   3'- -AGUUGuuccCGCCCCuUCGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 6831 0.68 0.669344
Target:  5'- aUAACAAaagcggggaguuGGGgGGGGggGCGG-CGCu -3'
miRNA:   3'- aGUUGUU------------CCCgCCCCuuCGUCgGCGu -5'
6494 5' -58.2 NC_001847.1 + 6952 0.71 0.478491
Target:  5'- -gGGCcAGGcGCGGGGucGCGGCgGCGc -3'
miRNA:   3'- agUUGuUCC-CGCCCCuuCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 7427 0.69 0.618049
Target:  5'- -gGGgGGGGGgGGGGGcguacuugcAGCGGcCCGCAc -3'
miRNA:   3'- agUUgUUCCCgCCCCU---------UCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 7725 0.71 0.469057
Target:  5'- uUCAggcGCAGGGcGCGGgcgcGGAGGCGGCgGCc -3'
miRNA:   3'- -AGU---UGUUCC-CGCC----CCUUCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 7734 0.68 0.628318
Target:  5'- aUCGGCGAGGGUcgaucgauuaacGGGGcgcauauGCGGCCGg- -3'
miRNA:   3'- -AGUUGUUCCCG------------CCCCuu-----CGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 8134 0.66 0.768499
Target:  5'- ---cCAGGGGCGGGc--GguGCUGCGc -3'
miRNA:   3'- aguuGUUCCCGCCCcuuCguCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 8383 0.67 0.699822
Target:  5'- gCAGCGuGGGCGucugccgcguaGGcuacGGGCAGCCGCAc -3'
miRNA:   3'- aGUUGUuCCCGC-----------CCc---UUCGUCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.