miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 134959 0.73 0.39731
Target:  5'- -gGGCGGGGGCGGGGGccccGGgGGCCaagacGCAg -3'
miRNA:   3'- agUUGUUCCCGCCCCU----UCgUCGG-----CGU- -5'
6494 5' -58.2 NC_001847.1 + 134843 0.76 0.263841
Target:  5'- cCGGCGGGGcGCGGGGAcGGCGcCCGCGc -3'
miRNA:   3'- aGUUGUUCC-CGCCCCU-UCGUcGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 134630 0.71 0.469057
Target:  5'- aCAGCGuGGGCuGGGGGcgggccggcAGCAGgCGCGg -3'
miRNA:   3'- aGUUGUuCCCG-CCCCU---------UCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 134507 0.76 0.23962
Target:  5'- gUCGGgccuCGGGGGCGGGGGgaGGCgcgGGCCGCGc -3'
miRNA:   3'- -AGUU----GUUCCCGCCCCU--UCG---UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 134232 0.73 0.356201
Target:  5'- cCGGCGccGGCGGGcGGcggccGGCGGCCGCGg -3'
miRNA:   3'- aGUUGUucCCGCCC-CU-----UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 132796 0.67 0.699822
Target:  5'- gCGGCcGGGccggcGCGGcGGGAGCcGCCGCu -3'
miRNA:   3'- aGUUGuUCC-----CGCC-CCUUCGuCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 132688 0.69 0.618049
Target:  5'- -gGACGGGGaCGGGGAcggcgaGGCGGCgGCc -3'
miRNA:   3'- agUUGUUCCcGCCCCU------UCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 132666 0.71 0.488017
Target:  5'- uUCAcACGGcGGCGGGGgcGCcGCCGCc -3'
miRNA:   3'- -AGU-UGUUcCCGCCCCuuCGuCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 132603 0.67 0.729784
Target:  5'- cCGGCcc-GGCGGcGGGAGC-GCCGCc -3'
miRNA:   3'- aGUUGuucCCGCC-CCUUCGuCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 132544 0.66 0.758981
Target:  5'- cCGGCGc-GGCGGGcucgcguGCGGCCGCGg -3'
miRNA:   3'- aGUUGUucCCGCCCcuu----CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 132192 0.68 0.659112
Target:  5'- gCGcCGA-GGCGGccgccgcgcuGGAGGCGGCCGCGc -3'
miRNA:   3'- aGUuGUUcCCGCC----------CCUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 131918 0.7 0.517109
Target:  5'- aCGGCGcGGGCGGcGcGcGAGCGGCUGCGc -3'
miRNA:   3'- aGUUGUuCCCGCC-C-C-UUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 131476 0.74 0.33301
Target:  5'- -aGAUggGGgacGCGGGGAAGCAGUaCGCGg -3'
miRNA:   3'- agUUGuuCC---CGCCCCUUCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 131439 0.67 0.739614
Target:  5'- gCGGCGGccGCGGGGcccGCGGCCGUg -3'
miRNA:   3'- aGUUGUUccCGCCCCuu-CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 131026 0.67 0.699822
Target:  5'- aCGAUggGGGCGaggcccgggaGGGGAGCAccgacGCCGaCGc -3'
miRNA:   3'- aGUUGuuCCCGC----------CCCUUCGU-----CGGC-GU- -5'
6494 5' -58.2 NC_001847.1 + 130803 0.75 0.290012
Target:  5'- gCGGCcGGGGC--GGAGGCGGCCGCGg -3'
miRNA:   3'- aGUUGuUCCCGccCCUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 130210 0.73 0.388847
Target:  5'- gCGGCGcggAGGGCGcGGGAAGC-GCgGCGg -3'
miRNA:   3'- aGUUGU---UCCCGC-CCCUUCGuCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 130204 0.7 0.536883
Target:  5'- aUAGCGAGGuugcuCGGGGggGCGcuguuGCCGCc -3'
miRNA:   3'- aGUUGUUCCc----GCCCCuuCGU-----CGGCGu -5'
6494 5' -58.2 NC_001847.1 + 129661 0.72 0.441346
Target:  5'- aCAAgaaaGAGGcGCGGGGAAaggagagagacGCGGCCGCc -3'
miRNA:   3'- aGUUg---UUCC-CGCCCCUU-----------CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 129644 0.67 0.71987
Target:  5'- cCGACgAAGuGGCGGucgaGGuugcGGCGGCCGCu -3'
miRNA:   3'- aGUUG-UUC-CCGCC----CCu---UCGUCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.