miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 8615 0.73 0.364179
Target:  5'- gCAgcGCAAGccccGcCGGGGGAGCGGCCGCu -3'
miRNA:   3'- aGU--UGUUCc---C-GCCCCUUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 8615 0.68 0.659112
Target:  5'- cUCGGcCGGGGGCGGGGgGAGgAG-CGCc -3'
miRNA:   3'- -AGUU-GUUCCCGCCCC-UUCgUCgGCGu -5'
6494 5' -58.2 NC_001847.1 + 8994 0.67 0.689708
Target:  5'- -aGACGGGGGUGGGGGcugGGUGGgCGgAg -3'
miRNA:   3'- agUUGUUCCCGCCCCU---UCGUCgGCgU- -5'
6494 5' -58.2 NC_001847.1 + 9235 0.69 0.618049
Target:  5'- --cGCGGGGGCGGGGcuGauuGaCCGCAa -3'
miRNA:   3'- aguUGUUCCCGCCCCuuCgu-C-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 10102 0.72 0.432316
Target:  5'- --cACAAGcGGCGGGGAA--AGCCGCc -3'
miRNA:   3'- aguUGUUC-CCGCCCCUUcgUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 10732 0.68 0.659112
Target:  5'- cCAGCGaguuuaggGGGGCGGGGccccGCGGCCc-- -3'
miRNA:   3'- aGUUGU--------UCCCGCCCCuu--CGUCGGcgu -5'
6494 5' -58.2 NC_001847.1 + 11778 0.71 0.478491
Target:  5'- ---cUAAGGGCGGGcGGGCAGUgGCGc -3'
miRNA:   3'- aguuGUUCCCGCCCcUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 11827 0.68 0.659112
Target:  5'- aCAGCGcgcGGGgGGGGggGC-GCCuaGCGg -3'
miRNA:   3'- aGUUGUu--CCCgCCCCuuCGuCGG--CGU- -5'
6494 5' -58.2 NC_001847.1 + 12492 0.66 0.787159
Target:  5'- gCGGCGGGGGCGGccaagaacccGGGccagacgacgaaGGCGacgacGCCGCAg -3'
miRNA:   3'- aGUUGUUCCCGCC----------CCU------------UCGU-----CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 12996 0.67 0.689708
Target:  5'- cCGGCuGGGGGUGGGGGgccugugccgAGCAGUagacggCGCAg -3'
miRNA:   3'- aGUUG-UUCCCGCCCCU----------UCGUCG------GCGU- -5'
6494 5' -58.2 NC_001847.1 + 13115 0.68 0.648858
Target:  5'- gCGGCcGGGGCGcgcGGGcGGC-GCCGCGc -3'
miRNA:   3'- aGUUGuUCCCGC---CCCuUCGuCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 13245 0.68 0.669344
Target:  5'- cCAGCGGGGccacGCGGGcGGuucgcaGGCAGgCCGCGu -3'
miRNA:   3'- aGUUGUUCC----CGCCC-CU------UCGUC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 13332 0.66 0.768499
Target:  5'- cCGGCAcGGGCGGcG-AGCAGgCGCc -3'
miRNA:   3'- aGUUGUuCCCGCCcCuUCGUCgGCGu -5'
6494 5' -58.2 NC_001847.1 + 14020 0.68 0.669344
Target:  5'- gCAGCAGGcGGCGGc---GCAGCgCGCAg -3'
miRNA:   3'- aGUUGUUC-CCGCCccuuCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 14132 0.78 0.182486
Target:  5'- -gGGCGAuGGGCGGGGcccgcgccuGGGCGGCCGCu -3'
miRNA:   3'- agUUGUU-CCCGCCCC---------UUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 14156 0.69 0.618049
Target:  5'- --cGCAGcGGCGGccGggGCGGCCGCGc -3'
miRNA:   3'- aguUGUUcCCGCCc-CuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 14441 0.69 0.618049
Target:  5'- cUCGACGGcGcCGGGGugcGCGGCCGCGg -3'
miRNA:   3'- -AGUUGUUcCcGCCCCuu-CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 15009 0.67 0.739614
Target:  5'- cUCGGCcgcGGUGGGGccGCgcgAGCCGCGg -3'
miRNA:   3'- -AGUUGuucCCGCCCCuuCG---UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 15102 0.67 0.71987
Target:  5'- -gAGCAaagGGGGCggucgGGGGAGGgccuaGGCCGCu -3'
miRNA:   3'- agUUGU---UCCCG-----CCCCUUCg----UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 15331 0.67 0.709879
Target:  5'- gUAGCGGGGGCGGgcGGggGguGC-GUg -3'
miRNA:   3'- aGUUGUUCCCGCC--CCuuCguCGgCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.