miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 26086 0.77 0.228221
Target:  5'- gCAAUgcuGGGGGCGGaGGGAGCAGUgGCGc -3'
miRNA:   3'- aGUUG---UUCCCGCC-CCUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 128899 0.77 0.228221
Target:  5'- gCAAUgcuGGGGGCGGaGGGAGCAGUgGCGc -3'
miRNA:   3'- aGUUG---UUCCCGCC-CCUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 90329 0.76 0.233862
Target:  5'- --cGCcGGGGcCGGGGgcGCAGCCGCc -3'
miRNA:   3'- aguUGuUCCC-GCCCCuuCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 102673 0.76 0.233862
Target:  5'- --cGCGAGGGCGGGGggGCGGg-GCGg -3'
miRNA:   3'- aguUGUUCCCGCCCCuuCGUCggCGU- -5'
6494 5' -58.2 NC_001847.1 + 64930 0.76 0.23962
Target:  5'- cCAACGccGGCGGGGcGGGUGGCCGCu -3'
miRNA:   3'- aGUUGUucCCGCCCC-UUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 134507 0.76 0.23962
Target:  5'- gUCGGgccuCGGGGGCGGGGGgaGGCgcgGGCCGCGc -3'
miRNA:   3'- -AGUU----GUUCCCGCCCCU--UCG---UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 31694 0.76 0.23962
Target:  5'- gUCGGgccuCGGGGGCGGGGGgaGGCgcgGGCCGCGc -3'
miRNA:   3'- -AGUU----GUUCCCGCCCCU--UCG---UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 3024 0.76 0.250885
Target:  5'- cCAAUAGGGGCGGucAcgucugcgcgcccAGCAGCCGCAg -3'
miRNA:   3'- aGUUGUUCCCGCCccU-------------UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 32030 0.76 0.263841
Target:  5'- cCGGCGGGGcGCGGGGAcGGCGcCCGCGc -3'
miRNA:   3'- aGUUGUUCC-CGCCCCU-UCGUcGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 134843 0.76 0.263841
Target:  5'- cCGGCGGGGcGCGGGGAcGGCGcCCGCGc -3'
miRNA:   3'- aGUUGUUCC-CGCCCCU-UCGUcGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 100540 0.76 0.263841
Target:  5'- -aGugGGuGGGCGGGGAGcCGGCCGCGg -3'
miRNA:   3'- agUugUU-CCCGCCCCUUcGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 97722 0.75 0.276679
Target:  5'- gUCGGCGGGGGCagaaGcGGAAGCGGCgGCGg -3'
miRNA:   3'- -AGUUGUUCCCGc---C-CCUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 71068 0.75 0.276679
Target:  5'- aCAccuCGAGGGCGGcGAGGCGGCCGg- -3'
miRNA:   3'- aGUu--GUUCCCGCCcCUUCGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 96309 0.75 0.283283
Target:  5'- gCGGCAAuGGCGGGGccGGCGGCgGCAa -3'
miRNA:   3'- aGUUGUUcCCGCCCCu-UCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 96393 0.75 0.283283
Target:  5'- gCGGCAAuGGCGGGGccGGCGGCgGCAa -3'
miRNA:   3'- aGUUGUUcCCGCCCCu-UCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 27990 0.75 0.290012
Target:  5'- gCGGCcGGGGC--GGAGGCGGCCGCGg -3'
miRNA:   3'- aGUUGuUCCCGccCCUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 130803 0.75 0.290012
Target:  5'- gCGGCcGGGGC--GGAGGCGGCCGCGg -3'
miRNA:   3'- aGUUGuUCCCGccCCUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 121177 0.75 0.290012
Target:  5'- cCGGcCAGGGGCGggcucgccacGGGccGCAGCCGCAg -3'
miRNA:   3'- aGUU-GUUCCCGC----------CCCuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 53773 0.74 0.310946
Target:  5'- gCGGCGAGGGCGGcagcaccGCAGCCGCc -3'
miRNA:   3'- aGUUGUUCCCGCCccuu---CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 53091 0.74 0.32553
Target:  5'- cUCAGCGuucGGCGGGGcGGCGGcCCGCc -3'
miRNA:   3'- -AGUUGUuc-CCGCCCCuUCGUC-GGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.