miRNA display CGI


Results 21 - 40 of 313 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 5982 0.66 0.777895
Target:  5'- cUCGGCuuu-GCGGGG-GGCAGCCGa- -3'
miRNA:   3'- -AGUUGuuccCGCCCCuUCGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 39425 0.66 0.777895
Target:  5'- gCAGCGAGGGgGGcgcguGGgcGUAGCC-CAu -3'
miRNA:   3'- aGUUGUUCCCgCC-----CCuuCGUCGGcGU- -5'
6494 5' -58.2 NC_001847.1 + 25064 0.66 0.777895
Target:  5'- aCGAUggGGGgGGGGAGGgGGaaaaaagGCAa -3'
miRNA:   3'- aGUUGuuCCCgCCCCUUCgUCgg-----CGU- -5'
6494 5' -58.2 NC_001847.1 + 84230 0.66 0.776961
Target:  5'- aCGGCcGGGGCcgccgcgGGGGAGGagGGCgGCGa -3'
miRNA:   3'- aGUUGuUCCCG-------CCCCUUCg-UCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 27128 0.66 0.775089
Target:  5'- uUCGACGuc-GCgaaacugccguccgGGGGgcGCAGCCGCGg -3'
miRNA:   3'- -AGUUGUuccCG--------------CCCCuuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 13332 0.66 0.768499
Target:  5'- cCGGCAcGGGCGGcG-AGCAGgCGCc -3'
miRNA:   3'- aGUUGUuCCCGCCcCuUCGUCgGCGu -5'
6494 5' -58.2 NC_001847.1 + 90487 0.66 0.768499
Target:  5'- gUCAcgguGCA--GGCGGGGcAGCAGCCu-- -3'
miRNA:   3'- -AGU----UGUucCCGCCCCuUCGUCGGcgu -5'
6494 5' -58.2 NC_001847.1 + 19811 0.66 0.768499
Target:  5'- gUCAACGccAGcGGCGGGGuGGCuuuuGUCGaCAc -3'
miRNA:   3'- -AGUUGU--UC-CCGCCCCuUCGu---CGGC-GU- -5'
6494 5' -58.2 NC_001847.1 + 120839 0.66 0.768499
Target:  5'- gCAGCGGGaGCGGGGccGCGacGCCGgAg -3'
miRNA:   3'- aGUUGUUCcCGCCCCuuCGU--CGGCgU- -5'
6494 5' -58.2 NC_001847.1 + 94854 0.66 0.768499
Target:  5'- gCGcCGAGGGggaccuUGGGGGgcgcgGGCAGCuCGCAa -3'
miRNA:   3'- aGUuGUUCCC------GCCCCU-----UCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 72592 0.66 0.768499
Target:  5'- gCGGCcgcGGCGGcagaaGggGCAGCCGCu -3'
miRNA:   3'- aGUUGuucCCGCCc----CuuCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 38279 0.66 0.768499
Target:  5'- --cGCGcGGGCGGcGGcAGGUGGCgGCAg -3'
miRNA:   3'- aguUGUuCCCGCC-CC-UUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 58025 0.66 0.768499
Target:  5'- gCAACAAGGGCGGcccgcugcuGGcgacccggcuGAcGCAGCuCGCGc -3'
miRNA:   3'- aGUUGUUCCCGCC---------CC----------UU-CGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 59026 0.66 0.768499
Target:  5'- gCGACGGuGGCGGGu--GCGGCgGCGg -3'
miRNA:   3'- aGUUGUUcCCGCCCcuuCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 8134 0.66 0.768499
Target:  5'- ---cCAGGGGCGGGc--GguGCUGCGc -3'
miRNA:   3'- aguuGUUCCCGCCCcuuCguCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 17844 0.66 0.767552
Target:  5'- gUCGGCGAaacagaggucgucGGGCGcGGGGcgccccaaaacGGCGGCCccGCAg -3'
miRNA:   3'- -AGUUGUU-------------CCCGC-CCCU-----------UCGUCGG--CGU- -5'
6494 5' -58.2 NC_001847.1 + 119211 0.66 0.762802
Target:  5'- gUCGGCGccgcggccaccgcggGGcGGCGGGGcAGGCauggGGCCGUc -3'
miRNA:   3'- -AGUUGU---------------UC-CCGCCCC-UUCG----UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 66694 0.66 0.758981
Target:  5'- cCGGCcgcGGGCGcGGAccucuGCGGCCGCu -3'
miRNA:   3'- aGUUGuu-CCCGCcCCUu----CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 132544 0.66 0.758981
Target:  5'- cCGGCGc-GGCGGGcucgcguGCGGCCGCGg -3'
miRNA:   3'- aGUUGUucCCGCCCcuu----CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 123727 0.66 0.758981
Target:  5'- gCAGCAGcGGCGGcGGcaucGGCGGCgCGCu -3'
miRNA:   3'- aGUUGUUcCCGCC-CCu---UCGUCG-GCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.