miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 66694 0.66 0.758981
Target:  5'- cCGGCcgcGGGCGcGGAccucuGCGGCCGCu -3'
miRNA:   3'- aGUUGuu-CCCGCcCCUu----CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 118119 0.66 0.758981
Target:  5'- aCuuCGAGGGCGGcGAGGCcGuCUGCGa -3'
miRNA:   3'- aGuuGUUCCCGCCcCUUCGuC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 123727 0.66 0.758981
Target:  5'- gCAGCAGcGGCGGcGGcaucGGCGGCgCGCu -3'
miRNA:   3'- aGUUGUUcCCGCC-CCu---UCGUCG-GCGu -5'
6494 5' -58.2 NC_001847.1 + 95262 0.66 0.758022
Target:  5'- gCGAuCGGGGGCGcgaucGGGGGcgccggcaagcuuGCGGCCGCu -3'
miRNA:   3'- aGUU-GUUCCCGC-----CCCUU-------------CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 56907 0.66 0.756103
Target:  5'- gUCGGCcuccAGGGCGaacccgcccGGGAAcacgacggugcaccGCAGCCGCc -3'
miRNA:   3'- -AGUUGu---UCCCGC---------CCCUU--------------CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 33554 0.66 0.749349
Target:  5'- ----gAAGaGGCGGcagacgccgcGGAGGCGGCCGUg -3'
miRNA:   3'- aguugUUC-CCGCC----------CCUUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 32423 0.66 0.749349
Target:  5'- cCAGCcgcuuuucGGGGCGGuGGcccAGGCGcuGCCGCAg -3'
miRNA:   3'- aGUUGu-------UCCCGCC-CC---UUCGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 69206 0.66 0.749349
Target:  5'- cCAGCGccuGGGcguccGCGGGGAAcGCcgacGCCGCGa -3'
miRNA:   3'- aGUUGU---UCC-----CGCCCCUU-CGu---CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 53019 0.66 0.749349
Target:  5'- -uGGCAuccGGGCGucGGGcGGCAGgCGCAa -3'
miRNA:   3'- agUUGUu--CCCGC--CCCuUCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 18953 0.66 0.749349
Target:  5'- gCGGCGuccGGGCGGcGAcgaccagcGCGGCCGCGg -3'
miRNA:   3'- aGUUGUu--CCCGCCcCUu-------CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 98244 0.66 0.749349
Target:  5'- gCGACGccguGGcGGCGGGGcAGCguAGUCGCc -3'
miRNA:   3'- aGUUGU----UC-CCGCCCCuUCG--UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 70274 0.66 0.749349
Target:  5'- aCcGCGAGGacgcgcgccugGCGGGGucGCGGCgCGCc -3'
miRNA:   3'- aGuUGUUCC-----------CGCCCCuuCGUCG-GCGu -5'
6494 5' -58.2 NC_001847.1 + 42986 0.67 0.739614
Target:  5'- gCAACAAcgccGGGaacgccgcCGGGGggGCgcgccgGGCCGCc -3'
miRNA:   3'- aGUUGUU----CCC--------GCCCCuuCG------UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 35248 0.67 0.739614
Target:  5'- cCGGCGGGcGcGCGGcGGAGauCAGCCGCGc -3'
miRNA:   3'- aGUUGUUC-C-CGCC-CCUUc-GUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 131439 0.67 0.739614
Target:  5'- gCGGCGGccGCGGGGcccGCGGCCGUg -3'
miRNA:   3'- aGUUGUUccCGCCCCuu-CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 15009 0.67 0.739614
Target:  5'- cUCGGCcgcGGUGGGGccGCgcgAGCCGCGg -3'
miRNA:   3'- -AGUUGuucCCGCCCCuuCG---UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 16617 0.67 0.739614
Target:  5'- gCGugGucuuuGGGgGGGGgcGCGGCgGCu -3'
miRNA:   3'- aGUugUu----CCCgCCCCuuCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 129136 0.67 0.739614
Target:  5'- -gGAgAAGGGUGaGGG--GCGGCCGUg -3'
miRNA:   3'- agUUgUUCCCGC-CCCuuCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 35441 0.67 0.739614
Target:  5'- -gAGCAcGGuGCGGcGcGAcGCGGCCGCGg -3'
miRNA:   3'- agUUGUuCC-CGCC-C-CUuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 55455 0.67 0.739614
Target:  5'- -uGGCGccGGCGGGGc-GCGcGCCGCGc -3'
miRNA:   3'- agUUGUucCCGCCCCuuCGU-CGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.