miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 96801 0.66 0.787159
Target:  5'- -aAGCu-GGGuCGGGGGGcgcGCAGCgGCGg -3'
miRNA:   3'- agUUGuuCCC-GCCCCUU---CGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 118119 0.66 0.758981
Target:  5'- aCuuCGAGGGCGGcGAGGCcGuCUGCGa -3'
miRNA:   3'- aGuuGUUCCCGCCcCUUCGuC-GGCGU- -5'
6494 5' -58.2 NC_001847.1 + 68616 0.66 0.758981
Target:  5'- cCAGC--GGGcCGGGGAccgcaaGGCGGCgCGCc -3'
miRNA:   3'- aGUUGuuCCC-GCCCCU------UCGUCG-GCGu -5'
6494 5' -58.2 NC_001847.1 + 17250 1.09 0.001437
Target:  5'- cUCAACAAGGGCGGGGAAGCAGCCGCAg -3'
miRNA:   3'- -AGUUGUUCCCGCCCCUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 86018 0.66 0.777895
Target:  5'- -aGGCGGGGcGCGGcGGGAGCgcgaggaggacaAGCCGg- -3'
miRNA:   3'- agUUGUUCC-CGCC-CCUUCG------------UCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 58170 0.66 0.777895
Target:  5'- gCGACcgcGGCGGGGucGUcaaAGCCGCc -3'
miRNA:   3'- aGUUGuucCCGCCCCuuCG---UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 39425 0.66 0.777895
Target:  5'- gCAGCGAGGGgGGcgcguGGgcGUAGCC-CAu -3'
miRNA:   3'- aGUUGUUCCCgCC-----CCuuCGUCGGcGU- -5'
6494 5' -58.2 NC_001847.1 + 19811 0.66 0.768499
Target:  5'- gUCAACGccAGcGGCGGGGuGGCuuuuGUCGaCAc -3'
miRNA:   3'- -AGUUGU--UC-CCGCCCCuUCGu---CGGC-GU- -5'
6494 5' -58.2 NC_001847.1 + 90487 0.66 0.768499
Target:  5'- gUCAcgguGCA--GGCGGGGcAGCAGCCu-- -3'
miRNA:   3'- -AGU----UGUucCCGCCCCuUCGUCGGcgu -5'
6494 5' -58.2 NC_001847.1 + 132544 0.66 0.758981
Target:  5'- cCGGCGc-GGCGGGcucgcguGCGGCCGCGg -3'
miRNA:   3'- aGUUGUucCCGCCCcuu----CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 17844 0.66 0.767552
Target:  5'- gUCGGCGAaacagaggucgucGGGCGcGGGGcgccccaaaacGGCGGCCccGCAg -3'
miRNA:   3'- -AGUUGUU-------------CCCGC-CCCU-----------UCGUCGG--CGU- -5'
6494 5' -58.2 NC_001847.1 + 94854 0.66 0.768499
Target:  5'- gCGcCGAGGGggaccuUGGGGGgcgcgGGCAGCuCGCAa -3'
miRNA:   3'- aGUuGUUCCC------GCCCCU-----UCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 73232 0.66 0.787159
Target:  5'- -gGAgGGGGGCGGcGgcGCGGgCGCGc -3'
miRNA:   3'- agUUgUUCCCGCCcCuuCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 119211 0.66 0.762802
Target:  5'- gUCGGCGccgcggccaccgcggGGcGGCGGGGcAGGCauggGGCCGUc -3'
miRNA:   3'- -AGUUGU---------------UC-CCGCCCC-UUCG----UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 124453 0.66 0.787159
Target:  5'- -aGGCcGGcGGUGcGGGAAGCGGCUGg- -3'
miRNA:   3'- agUUGuUC-CCGC-CCCUUCGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 13332 0.66 0.768499
Target:  5'- cCGGCAcGGGCGGcG-AGCAGgCGCc -3'
miRNA:   3'- aGUUGUuCCCGCCcCuUCGUCgGCGu -5'
6494 5' -58.2 NC_001847.1 + 66694 0.66 0.758981
Target:  5'- cCGGCcgcGGGCGcGGAccucuGCGGCCGCu -3'
miRNA:   3'- aGUUGuu-CCCGCcCCUu----CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 91313 0.66 0.758981
Target:  5'- gCAGCGccAGcGCGGcaaaGAAGCGGCCGCc -3'
miRNA:   3'- aGUUGU--UCcCGCCc---CUUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 96264 0.66 0.787159
Target:  5'- gCGGCAAuGGCGGGGccggaaccGgGGCCGUAc -3'
miRNA:   3'- aGUUGUUcCCGCCCCuu------CgUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 25064 0.66 0.777895
Target:  5'- aCGAUggGGGgGGGGAGGgGGaaaaaagGCAa -3'
miRNA:   3'- aGUUGuuCCCgCCCCUUCgUCgg-----CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.