miRNA display CGI


Results 61 - 80 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 35248 0.67 0.739614
Target:  5'- cCGGCGGGcGcGCGGcGGAGauCAGCCGCGc -3'
miRNA:   3'- aGUUGUUC-C-CGCC-CCUUc-GUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 16617 0.67 0.739614
Target:  5'- gCGugGucuuuGGGgGGGGgcGCGGCgGCu -3'
miRNA:   3'- aGUugUu----CCCgCCCCuuCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 15009 0.67 0.739614
Target:  5'- cUCGGCcgcGGUGGGGccGCgcgAGCCGCGg -3'
miRNA:   3'- -AGUUGuucCCGCCCCuuCG---UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 131439 0.67 0.739614
Target:  5'- gCGGCGGccGCGGGGcccGCGGCCGUg -3'
miRNA:   3'- aGUUGUUccCGCCCCuu-CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 132603 0.67 0.729784
Target:  5'- cCGGCcc-GGCGGcGGGAGC-GCCGCc -3'
miRNA:   3'- aGUUGuucCCGCC-CCUUCGuCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 70240 0.67 0.729784
Target:  5'- -uGACGcgcGGGGCGGGc-GGCGGgCGCGc -3'
miRNA:   3'- agUUGU---UCCCGCCCcuUCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 54386 0.67 0.729784
Target:  5'- gCGGCGGGcGGCcgcGGGcGAGGCGGgCGCc -3'
miRNA:   3'- aGUUGUUC-CCG---CCC-CUUCGUCgGCGu -5'
6494 5' -58.2 NC_001847.1 + 35535 0.67 0.729784
Target:  5'- cUCGGCGAGGucGUGGcugccGAGGCGGCgCGCGa -3'
miRNA:   3'- -AGUUGUUCC--CGCCc----CUUCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 72400 0.67 0.729784
Target:  5'- -gGACGcGGGCcccgacgcGGGGAcGGCcacGGCCGCAa -3'
miRNA:   3'- agUUGUuCCCG--------CCCCU-UCG---UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 3311 0.67 0.729784
Target:  5'- uUCAGguAcaGCGGGuAGGCGGCCGCGc -3'
miRNA:   3'- -AGUUguUccCGCCCcUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 128163 0.67 0.729784
Target:  5'- aUCuGCu-GGGCGGcccgccgggcGGAAGCGccGCCGCGa -3'
miRNA:   3'- -AGuUGuuCCCGCC----------CCUUCGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 96195 0.67 0.729784
Target:  5'- gCGGCAAuGGCGGGGccgGAGUcggGGCCGgAg -3'
miRNA:   3'- aGUUGUUcCCGCCCC---UUCG---UCGGCgU- -5'
6494 5' -58.2 NC_001847.1 + 29790 0.67 0.729784
Target:  5'- cCGGCcc-GGCGGcGGGAGC-GCCGCc -3'
miRNA:   3'- aGUUGuucCCGCC-CCUUCGuCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 16581 0.67 0.729784
Target:  5'- aCAGCGGGGuCGGGGcggcguGGGguGCCgGCGa -3'
miRNA:   3'- aGUUGUUCCcGCCCC------UUCguCGG-CGU- -5'
6494 5' -58.2 NC_001847.1 + 125575 0.67 0.71987
Target:  5'- gCGGCcgcGGGCGGcGGGcuGGaCGGCUGCAg -3'
miRNA:   3'- aGUUGuu-CCCGCC-CCU--UC-GUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 124711 0.67 0.71987
Target:  5'- -gAGCcGGGcGCGGGGGcGGCAG-CGCGa -3'
miRNA:   3'- agUUGuUCC-CGCCCCU-UCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 20483 0.67 0.71987
Target:  5'- gUCGACGuuGGCGaGGAAGaCGGCuCGCGc -3'
miRNA:   3'- -AGUUGUucCCGCcCCUUC-GUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 15102 0.67 0.71987
Target:  5'- -gAGCAaagGGGGCggucgGGGGAGGgccuaGGCCGCu -3'
miRNA:   3'- agUUGU---UCCCG-----CCCCUUCg----UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 129644 0.67 0.71987
Target:  5'- cCGACgAAGuGGCGGucgaGGuugcGGCGGCCGCu -3'
miRNA:   3'- aGUUG-UUC-CCGCC----CCu---UCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 117323 0.67 0.71987
Target:  5'- gCGACcuAGcGGCGGGG-GGCGGCCu-- -3'
miRNA:   3'- aGUUGu-UC-CCGCCCCuUCGUCGGcgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.