Results 41 - 60 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6495 | 3' | -60.5 | NC_001847.1 | + | 124923 | 0.66 | 0.668187 |
Target: 5'- cCGGgGGCGAcagCGGGCgCGCccugGGCc -3' miRNA: 3'- aGUCgUCGCUaa-GCCCGgGCGa---CCGc -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 126236 | 0.66 | 0.668187 |
Target: 5'- gUCGGCGGgGcgUcCGGGgUCGUcGGCGg -3' miRNA: 3'- -AGUCGUCgCuaA-GCCCgGGCGaCCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 33708 | 0.66 | 0.668187 |
Target: 5'- --cGCGGCGGcgCGuGGCCgaGCUGGgGg -3' miRNA: 3'- aguCGUCGCUaaGC-CCGGg-CGACCgC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 22801 | 0.66 | 0.668187 |
Target: 5'- aCAGCucguaGAUgCGGGCCgGC-GGCGg -3' miRNA: 3'- aGUCGucg--CUAaGCCCGGgCGaCCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 73723 | 0.66 | 0.668187 |
Target: 5'- gCGGCcGCGGgcgUCgaGGGCCgGCUGGa- -3' miRNA: 3'- aGUCGuCGCUa--AG--CCCGGgCGACCgc -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 33222 | 0.66 | 0.668187 |
Target: 5'- cUCGGCuuGGCGccgcgcCGGGCgCCGC-GGCGc -3' miRNA: 3'- -AGUCG--UCGCuaa---GCCCG-GGCGaCCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 49202 | 0.66 | 0.662184 |
Target: 5'- aCGGUAGCccucgcgccgGGGCCCGCgGGCu -3' miRNA: 3'- aGUCGUCGcuaag-----CCCGGGCGaCCGc -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 127073 | 0.66 | 0.65918 |
Target: 5'- --cGCGGCGGUgccccccucugcgcgCGGGCCgCGC-GGCu -3' miRNA: 3'- aguCGUCGCUAa--------------GCCCGG-GCGaCCGc -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 90843 | 0.66 | 0.658178 |
Target: 5'- aUCAGCgAGCGGcgcccCGGGgCCgggGCUGGUGu -3' miRNA: 3'- -AGUCG-UCGCUaa---GCCCgGG---CGACCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 42730 | 0.66 | 0.658178 |
Target: 5'- cCGGC-GCGAgUUCGGGCUgGCgccccccugGGUGg -3' miRNA: 3'- aGUCGuCGCU-AAGCCCGGgCGa--------CCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 14330 | 0.66 | 0.658178 |
Target: 5'- --cGCGGUGGggcCGGGCgUGgUGGCGg -3' miRNA: 3'- aguCGUCGCUaa-GCCCGgGCgACCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 107040 | 0.66 | 0.658178 |
Target: 5'- aUCGGCGGUGucgcgCGcGGCCCcggGCaGGCGc -3' miRNA: 3'- -AGUCGUCGCuaa--GC-CCGGG---CGaCCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 57649 | 0.66 | 0.658178 |
Target: 5'- cCGGCcacCGAcUCGGGCCgGCgGGCc -3' miRNA: 3'- aGUCGuc-GCUaAGCCCGGgCGaCCGc -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 121486 | 0.66 | 0.658178 |
Target: 5'- aUCAGCAGCGucgUCGcGGUucgcaCCGCUacguaGGCc -3' miRNA: 3'- -AGUCGUCGCua-AGC-CCG-----GGCGA-----CCGc -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 78706 | 0.66 | 0.658178 |
Target: 5'- gCAGCAcGCGAgugCGGGCggucuuCCGCgacgcGGUGg -3' miRNA: 3'- aGUCGU-CGCUaa-GCCCG------GGCGa----CCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 48366 | 0.66 | 0.658178 |
Target: 5'- cCAGCAGCGucacgacCGuGGCgCCGCcgGGCc -3' miRNA: 3'- aGUCGUCGCuaa----GC-CCG-GGCGa-CCGc -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 52368 | 0.66 | 0.658178 |
Target: 5'- aCGGCAGCaac---GGCgCGCUGGCGc -3' miRNA: 3'- aGUCGUCGcuaagcCCGgGCGACCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 53703 | 0.66 | 0.658178 |
Target: 5'- cCAG-GGCGAgucugUGGGCCggcgGCUGGCGc -3' miRNA: 3'- aGUCgUCGCUaa---GCCCGGg---CGACCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 35628 | 0.66 | 0.658178 |
Target: 5'- cCGGCGGCGc-UgGGGCCagCGCUGGa- -3' miRNA: 3'- aGUCGUCGCuaAgCCCGG--GCGACCgc -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 49034 | 0.66 | 0.657176 |
Target: 5'- cCAGCGGCGAgccgUgGuGGCgcgcagcucacggCCGCgGGCGg -3' miRNA: 3'- aGUCGUCGCUa---AgC-CCG-------------GGCGaCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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