miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6495 3' -60.5 NC_001847.1 + 62551 0.66 0.678167
Target:  5'- cCAGCAGCGcguUUUGGcccaGCCCGCgcaucGCGu -3'
miRNA:   3'- aGUCGUCGCu--AAGCC----CGGGCGac---CGC- -5'
6495 3' -60.5 NC_001847.1 + 46204 0.66 0.678167
Target:  5'- cCGGCGGCGGccgccgcCGGGCCgGCc-GCGg -3'
miRNA:   3'- aGUCGUCGCUaa-----GCCCGGgCGacCGC- -5'
6495 3' -60.5 NC_001847.1 + 125503 0.66 0.678167
Target:  5'- cCGGCugcucgAGCGg--CGGGCCgGCgcGGCGg -3'
miRNA:   3'- aGUCG------UCGCuaaGCCCGGgCGa-CCGC- -5'
6495 3' -60.5 NC_001847.1 + 79284 0.66 0.678167
Target:  5'- -aAGCGGUgccGGUgaaCGGcGCCgGCUGGCa -3'
miRNA:   3'- agUCGUCG---CUAa--GCC-CGGgCGACCGc -5'
6495 3' -60.5 NC_001847.1 + 119580 0.66 0.678167
Target:  5'- gCAGCGGCGGc-CGcGGCCCGaC-GGCc -3'
miRNA:   3'- aGUCGUCGCUaaGC-CCGGGC-GaCCGc -5'
6495 3' -60.5 NC_001847.1 + 11892 0.66 0.678167
Target:  5'- aUCuGguGCGGccgGGGUCCGCgcUGGCGc -3'
miRNA:   3'- -AGuCguCGCUaagCCCGGGCG--ACCGC- -5'
6495 3' -60.5 NC_001847.1 + 129354 0.66 0.678167
Target:  5'- -aAGC-GCGGUgcCGGGCCCGg-GGCu -3'
miRNA:   3'- agUCGuCGCUAa-GCCCGGGCgaCCGc -5'
6495 3' -60.5 NC_001847.1 + 96823 0.66 0.678167
Target:  5'- gCGGCGGCGAccgcgCGGGC--GUUGGCu -3'
miRNA:   3'- aGUCGUCGCUaa---GCCCGggCGACCGc -5'
6495 3' -60.5 NC_001847.1 + 34523 0.66 0.678167
Target:  5'- aCGGCgccGGCGAUgCGccGCCCGCcgGGCGc -3'
miRNA:   3'- aGUCG---UCGCUAaGCc-CGGGCGa-CCGC- -5'
6495 3' -60.5 NC_001847.1 + 81855 0.66 0.678167
Target:  5'- gUCAGCGGCGugaggCGGacGCgCGCcugGGCGc -3'
miRNA:   3'- -AGUCGUCGCuaa--GCC--CGgGCGa--CCGC- -5'
6495 3' -60.5 NC_001847.1 + 4164 0.66 0.67717
Target:  5'- cCAGCgAGCGGgccuuguUUUGGGCCgCGCgcccgugGGCc -3'
miRNA:   3'- aGUCG-UCGCU-------AAGCCCGG-GCGa------CCGc -5'
6495 3' -60.5 NC_001847.1 + 126236 0.66 0.668187
Target:  5'- gUCGGCGGgGcgUcCGGGgUCGUcGGCGg -3'
miRNA:   3'- -AGUCGUCgCuaA-GCCCgGGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 115052 0.66 0.668187
Target:  5'- -gGGCuAGCGAUggcCGGGCCgCGCc-GCGg -3'
miRNA:   3'- agUCG-UCGCUAa--GCCCGG-GCGacCGC- -5'
6495 3' -60.5 NC_001847.1 + 22801 0.66 0.668187
Target:  5'- aCAGCucguaGAUgCGGGCCgGC-GGCGg -3'
miRNA:   3'- aGUCGucg--CUAaGCCCGGgCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 33708 0.66 0.668187
Target:  5'- --cGCGGCGGcgCGuGGCCgaGCUGGgGg -3'
miRNA:   3'- aguCGUCGCUaaGC-CCGGg-CGACCgC- -5'
6495 3' -60.5 NC_001847.1 + 73723 0.66 0.668187
Target:  5'- gCGGCcGCGGgcgUCgaGGGCCgGCUGGa- -3'
miRNA:   3'- aGUCGuCGCUa--AG--CCCGGgCGACCgc -5'
6495 3' -60.5 NC_001847.1 + 33222 0.66 0.668187
Target:  5'- cUCGGCuuGGCGccgcgcCGGGCgCCGC-GGCGc -3'
miRNA:   3'- -AGUCG--UCGCuaa---GCCCG-GGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 14807 0.66 0.668187
Target:  5'- gCAGCGGCGGagcugcgCGGcGCCCuGCgcgcGGUGg -3'
miRNA:   3'- aGUCGUCGCUaa-----GCC-CGGG-CGa---CCGC- -5'
6495 3' -60.5 NC_001847.1 + 124923 0.66 0.668187
Target:  5'- cCGGgGGCGAcagCGGGCgCGCccugGGCc -3'
miRNA:   3'- aGUCgUCGCUaa-GCCCGgGCGa---CCGc -5'
6495 3' -60.5 NC_001847.1 + 53091 0.66 0.668187
Target:  5'- cUCAGCguucGGCGGggCGgcGGCCCGCcagcGGCu -3'
miRNA:   3'- -AGUCG----UCGCUaaGC--CCGGGCGa---CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.