Results 21 - 40 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6495 | 3' | -60.5 | NC_001847.1 | + | 28189 | 0.73 | 0.281048 |
Target: 5'- aCuGCAGCGAUgcCGGGCCCGaggacgaugggGGCGa -3' miRNA: 3'- aGuCGUCGCUAa-GCCCGGGCga---------CCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 131002 | 0.73 | 0.281048 |
Target: 5'- aCuGCAGCGAUgcCGGGCCCGaggacgaugggGGCGa -3' miRNA: 3'- aGuCGUCGCUAa-GCCCGGGCga---------CCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 20745 | 0.73 | 0.282346 |
Target: 5'- cCGGCGGUGAggCGGGCCuCGCcuucgucGGCGc -3' miRNA: 3'- aGUCGUCGCUaaGCCCGG-GCGa------CCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 50051 | 0.73 | 0.282346 |
Target: 5'- gCGGUGGCGGccgCGGGUCCGCgcgcGGCGc -3' miRNA: 3'- aGUCGUCGCUaa-GCCCGGGCGa---CCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 121372 | 0.73 | 0.295587 |
Target: 5'- uUCAGCAGCaGGUUCaGGCugcccaucagCCGCUGcGCGa -3' miRNA: 3'- -AGUCGUCG-CUAAGcCCG----------GGCGAC-CGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 70704 | 0.73 | 0.295587 |
Target: 5'- gCGGCGGCGGg--GGcGCCCGC-GGCGa -3' miRNA: 3'- aGUCGUCGCUaagCC-CGGGCGaCCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 56876 | 0.73 | 0.302387 |
Target: 5'- -gGGC-GCGGccaCGGGCCCGCcGGCGa -3' miRNA: 3'- agUCGuCGCUaa-GCCCGGGCGaCCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 69479 | 0.73 | 0.309307 |
Target: 5'- cCAGCugcGCGAUggugCGGGCgcgcacgcggCCGUUGGCGg -3' miRNA: 3'- aGUCGu--CGCUAa---GCCCG----------GGCGACCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 73185 | 0.73 | 0.309307 |
Target: 5'- gCGGCGGCGGagUC-GGCCCGCgcgGGCc -3' miRNA: 3'- aGUCGUCGCUa-AGcCCGGGCGa--CCGc -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 69467 | 0.73 | 0.309307 |
Target: 5'- gCGGCGGCGg--CGGGgcuCCUGCUGGCc -3' miRNA: 3'- aGUCGUCGCuaaGCCC---GGGCGACCGc -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 36970 | 0.73 | 0.316346 |
Target: 5'- cCAGCgcgggcgccGGCGAg-CGGGCCCGCgccgagcGGCGg -3' miRNA: 3'- aGUCG---------UCGCUaaGCCCGGGCGa------CCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 123083 | 0.73 | 0.316346 |
Target: 5'- aCAGCGaCGAUgaCGGGCCCGCUaGCa -3' miRNA: 3'- aGUCGUcGCUAa-GCCCGGGCGAcCGc -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 62901 | 0.72 | 0.323506 |
Target: 5'- gCAGCGgguggcGCGGgugcUCgGGGCCCGCgGGCGg -3' miRNA: 3'- aGUCGU------CGCUa---AG-CCCGGGCGaCCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 53842 | 0.72 | 0.323506 |
Target: 5'- gCGGCAGCGg--CGGcGCUggcggCGCUGGCGg -3' miRNA: 3'- aGUCGUCGCuaaGCC-CGG-----GCGACCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 106790 | 0.72 | 0.32859 |
Target: 5'- gCAGCAGCGgg-CGGaugacggccgcgcuGCCCGCcGGCGa -3' miRNA: 3'- aGUCGUCGCuaaGCC--------------CGGGCGaCCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 125792 | 0.72 | 0.330786 |
Target: 5'- -uGGCaAGCGAgucggCGGGCCgGCgGGCGu -3' miRNA: 3'- agUCG-UCGCUaa---GCCCGGgCGaCCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 47767 | 0.72 | 0.338186 |
Target: 5'- aCAGCAGCuuguagUCGGGCCaCGCgucGGCc -3' miRNA: 3'- aGUCGUCGcua---AGCCCGG-GCGa--CCGc -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 116742 | 0.72 | 0.338186 |
Target: 5'- uUCGaCAGCcccgCGGGCCCGCaGGCGa -3' miRNA: 3'- -AGUcGUCGcuaaGCCCGGGCGaCCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 45662 | 0.72 | 0.338186 |
Target: 5'- --uGCGGCGGUUCaGGCuuGCgacGGCGg -3' miRNA: 3'- aguCGUCGCUAAGcCCGggCGa--CCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 92010 | 0.72 | 0.338186 |
Target: 5'- --cGCAGCGcccgCGGGCCCGCgccgucugcgGGCa -3' miRNA: 3'- aguCGUCGCuaa-GCCCGGGCGa---------CCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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