miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6495 3' -60.5 NC_001847.1 + 17020 1.09 0.000862
Target:  5'- aUCAGCAGCGAUUCGGGCCCGCUGGCGg -3'
miRNA:   3'- -AGUCGUCGCUAAGCCCGGGCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 85854 0.79 0.129304
Target:  5'- cCAGCAGCGAgUCGcGGCuCCGCgcGGCGa -3'
miRNA:   3'- aGUCGUCGCUaAGC-CCG-GGCGa-CCGC- -5'
6495 3' -60.5 NC_001847.1 + 61941 0.77 0.162252
Target:  5'- gUCAGCGGCGg--CGcGGCCCGCgcgGGCc -3'
miRNA:   3'- -AGUCGUCGCuaaGC-CCGGGCGa--CCGc -5'
6495 3' -60.5 NC_001847.1 + 36859 0.77 0.173095
Target:  5'- cUCGGCGGCGGccgagcucuacgCGGGgCUGCUGGCGa -3'
miRNA:   3'- -AGUCGUCGCUaa----------GCCCgGGCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 37457 0.76 0.186404
Target:  5'- gCAGCAGCGGgccugcguuggcCGGGCCCGgcCUGGCa -3'
miRNA:   3'- aGUCGUCGCUaa----------GCCCGGGC--GACCGc -5'
6495 3' -60.5 NC_001847.1 + 66216 0.76 0.188245
Target:  5'- cCAGCGGCGGcUCGGGCgCGCgcaaaagGGCu -3'
miRNA:   3'- aGUCGUCGCUaAGCCCGgGCGa------CCGc -5'
6495 3' -60.5 NC_001847.1 + 68 0.76 0.192918
Target:  5'- uUCGGCgcGGCGGgccCGGGCCCGCUcugGGCu -3'
miRNA:   3'- -AGUCG--UCGCUaa-GCCCGGGCGA---CCGc -5'
6495 3' -60.5 NC_001847.1 + 102881 0.76 0.192918
Target:  5'- uUCGGCgcGGCGGgccCGGGCCCGCUcugGGCu -3'
miRNA:   3'- -AGUCG--UCGCUaa-GCCCGGGCGA---CCGc -5'
6495 3' -60.5 NC_001847.1 + 43128 0.76 0.197693
Target:  5'- --cGCAGaCGGcgCGGGCCCGCgGGCGc -3'
miRNA:   3'- aguCGUC-GCUaaGCCCGGGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 29277 0.76 0.20257
Target:  5'- -uGGCGGCGAUUCGcGCggCGCUGGCGg -3'
miRNA:   3'- agUCGUCGCUAAGCcCGg-GCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 116648 0.76 0.207552
Target:  5'- cUCGGCAGCcg--CGGGCaCGCUGGUGg -3'
miRNA:   3'- -AGUCGUCGcuaaGCCCGgGCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 32674 0.75 0.212639
Target:  5'- cCGGCGGCG---CGGGCCCGCUcgagcugugcGGCGc -3'
miRNA:   3'- aGUCGUCGCuaaGCCCGGGCGA----------CCGC- -5'
6495 3' -60.5 NC_001847.1 + 125915 0.75 0.223134
Target:  5'- aUCAGCcccgcccccGCGAcuccuuuuuaUUGGGCCCGCUGGCGc -3'
miRNA:   3'- -AGUCGu--------CGCUa---------AGCCCGGGCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 69326 0.75 0.223134
Target:  5'- -gGGC-GCGGgccUCGGGCgCUGCUGGCGg -3'
miRNA:   3'- agUCGuCGCUa--AGCCCG-GGCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 43091 0.75 0.228545
Target:  5'- cUCGGCGGCGGa--GGcGCCCGgaGGCGc -3'
miRNA:   3'- -AGUCGUCGCUaagCC-CGGGCgaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 73032 0.75 0.228545
Target:  5'- gCGGCAGCGGccgCGGacaaCCUGCUGGCGa -3'
miRNA:   3'- aGUCGUCGCUaa-GCCc---GGGCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 43232 0.75 0.234067
Target:  5'- cCGGUGGCGGUggGGGCgCGCgGGCGg -3'
miRNA:   3'- aGUCGUCGCUAagCCCGgGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 81231 0.74 0.245446
Target:  5'- gCGGCAGCGGcggCGGGCCagGCUGGg- -3'
miRNA:   3'- aGUCGUCGCUaa-GCCCGGg-CGACCgc -5'
6495 3' -60.5 NC_001847.1 + 2078 0.74 0.257281
Target:  5'- -uGGCGGCGAgcgccccgCgGGGCCCGCgcGGCGg -3'
miRNA:   3'- agUCGUCGCUaa------G-CCCGGGCGa-CCGC- -5'
6495 3' -60.5 NC_001847.1 + 104891 0.74 0.257281
Target:  5'- -uGGCGGCGAgcgccccgCgGGGCCCGCgcGGCGg -3'
miRNA:   3'- agUCGUCGCUaa------G-CCCGGGCGa-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.