miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6495 3' -60.5 NC_001847.1 + 78706 0.66 0.658178
Target:  5'- gCAGCAcGCGAgugCGGGCggucuuCCGCgacgcGGUGg -3'
miRNA:   3'- aGUCGU-CGCUaa-GCCCG------GGCGa----CCGC- -5'
6495 3' -60.5 NC_001847.1 + 22801 0.66 0.668187
Target:  5'- aCAGCucguaGAUgCGGGCCgGC-GGCGg -3'
miRNA:   3'- aGUCGucg--CUAaGCCCGGgCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 128795 0.66 0.64815
Target:  5'- gUCAGaccagGGCGGgcgggCGGGCgCGCaGGCGc -3'
miRNA:   3'- -AGUCg----UCGCUaa---GCCCGgGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 49034 0.66 0.657176
Target:  5'- cCAGCGGCGAgccgUgGuGGCgcgcagcucacggCCGCgGGCGg -3'
miRNA:   3'- aGUCGUCGCUa---AgC-CCG-------------GGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 59558 0.66 0.64815
Target:  5'- -gGGCGGCGGgggCGGuGCCgGCggaagcucuggcUGGCGu -3'
miRNA:   3'- agUCGUCGCUaa-GCC-CGGgCG------------ACCGC- -5'
6495 3' -60.5 NC_001847.1 + 73723 0.66 0.668187
Target:  5'- gCGGCcGCGGgcgUCgaGGGCCgGCUGGa- -3'
miRNA:   3'- aGUCGuCGCUa--AG--CCCGGgCGACCgc -5'
6495 3' -60.5 NC_001847.1 + 124923 0.66 0.668187
Target:  5'- cCGGgGGCGAcagCGGGCgCGCccugGGCc -3'
miRNA:   3'- aGUCgUCGCUaa-GCCCGgGCGa---CCGc -5'
6495 3' -60.5 NC_001847.1 + 49202 0.66 0.662184
Target:  5'- aCGGUAGCccucgcgccgGGGCCCGCgGGCu -3'
miRNA:   3'- aGUCGUCGcuaag-----CCCGGGCGaCCGc -5'
6495 3' -60.5 NC_001847.1 + 14807 0.66 0.668187
Target:  5'- gCAGCGGCGGagcugcgCGGcGCCCuGCgcgcGGUGg -3'
miRNA:   3'- aGUCGUCGCUaa-----GCC-CGGG-CGa---CCGC- -5'
6495 3' -60.5 NC_001847.1 + 111276 0.66 0.64815
Target:  5'- -aGGCGGCGc--CGGGCCgGg-GGCGg -3'
miRNA:   3'- agUCGUCGCuaaGCCCGGgCgaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 42730 0.66 0.658178
Target:  5'- cCGGC-GCGAgUUCGGGCUgGCgccccccugGGUGg -3'
miRNA:   3'- aGUCGuCGCU-AAGCCCGGgCGa--------CCGC- -5'
6495 3' -60.5 NC_001847.1 + 52368 0.66 0.658178
Target:  5'- aCGGCAGCaac---GGCgCGCUGGCGc -3'
miRNA:   3'- aGUCGUCGcuaagcCCGgGCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 48366 0.66 0.658178
Target:  5'- cCAGCAGCGucacgacCGuGGCgCCGCcgGGCc -3'
miRNA:   3'- aGUCGUCGCuaa----GC-CCG-GGCGa-CCGc -5'
6495 3' -60.5 NC_001847.1 + 53703 0.66 0.658178
Target:  5'- cCAG-GGCGAgucugUGGGCCggcgGCUGGCGc -3'
miRNA:   3'- aGUCgUCGCUaa---GCCCGGg---CGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 35628 0.66 0.658178
Target:  5'- cCGGCGGCGc-UgGGGCCagCGCUGGa- -3'
miRNA:   3'- aGUCGUCGCuaAgCCCGG--GCGACCgc -5'
6495 3' -60.5 NC_001847.1 + 86361 0.66 0.64815
Target:  5'- cCGGCuguuGCGg--CGGuGCCCGCggauugUGGCGa -3'
miRNA:   3'- aGUCGu---CGCuaaGCC-CGGGCG------ACCGC- -5'
6495 3' -60.5 NC_001847.1 + 115052 0.66 0.668187
Target:  5'- -gGGCuAGCGAUggcCGGGCCgCGCc-GCGg -3'
miRNA:   3'- agUCG-UCGCUAa--GCCCGG-GCGacCGC- -5'
6495 3' -60.5 NC_001847.1 + 34783 0.66 0.64815
Target:  5'- gCGGCcGCGGcgCGcGGCuacgacccgcggCCGCUGGCGc -3'
miRNA:   3'- aGUCGuCGCUaaGC-CCG------------GGCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 70516 0.66 0.64815
Target:  5'- aUCaAGCAGCGGcugcUGGGCggcgUGCUGGCGc -3'
miRNA:   3'- -AG-UCGUCGCUaa--GCCCGg---GCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 33222 0.66 0.668187
Target:  5'- cUCGGCuuGGCGccgcgcCGGGCgCCGC-GGCGc -3'
miRNA:   3'- -AGUCG--UCGCuaa---GCCCG-GGCGaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.