miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6495 3' -60.5 NC_001847.1 + 116742 0.72 0.338186
Target:  5'- uUCGaCAGCcccgCGGGCCCGCaGGCGa -3'
miRNA:   3'- -AGUcGUCGcuaaGCCCGGGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 50051 0.73 0.282346
Target:  5'- gCGGUGGCGGccgCGGGUCCGCgcgcGGCGc -3'
miRNA:   3'- aGUCGUCGCUaa-GCCCGGGCGa---CCGC- -5'
6495 3' -60.5 NC_001847.1 + 20745 0.73 0.282346
Target:  5'- cCGGCGGUGAggCGGGCCuCGCcuucgucGGCGc -3'
miRNA:   3'- aGUCGUCGCUaaGCCCGG-GCGa------CCGC- -5'
6495 3' -60.5 NC_001847.1 + 56876 0.73 0.302387
Target:  5'- -gGGC-GCGGccaCGGGCCCGCcGGCGa -3'
miRNA:   3'- agUCGuCGCUaa-GCCCGGGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 69467 0.73 0.309307
Target:  5'- gCGGCGGCGg--CGGGgcuCCUGCUGGCc -3'
miRNA:   3'- aGUCGUCGCuaaGCCC---GGGCGACCGc -5'
6495 3' -60.5 NC_001847.1 + 36970 0.73 0.316346
Target:  5'- cCAGCgcgggcgccGGCGAg-CGGGCCCGCgccgagcGGCGg -3'
miRNA:   3'- aGUCG---------UCGCUaaGCCCGGGCGa------CCGC- -5'
6495 3' -60.5 NC_001847.1 + 123083 0.73 0.316346
Target:  5'- aCAGCGaCGAUgaCGGGCCCGCUaGCa -3'
miRNA:   3'- aGUCGUcGCUAa-GCCCGGGCGAcCGc -5'
6495 3' -60.5 NC_001847.1 + 53842 0.72 0.323506
Target:  5'- gCGGCAGCGg--CGGcGCUggcggCGCUGGCGg -3'
miRNA:   3'- aGUCGUCGCuaaGCC-CGG-----GCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 47767 0.72 0.338186
Target:  5'- aCAGCAGCuuguagUCGGGCCaCGCgucGGCc -3'
miRNA:   3'- aGUCGUCGcua---AGCCCGG-GCGa--CCGc -5'
6495 3' -60.5 NC_001847.1 + 131002 0.73 0.281048
Target:  5'- aCuGCAGCGAUgcCGGGCCCGaggacgaugggGGCGa -3'
miRNA:   3'- aGuCGUCGCUAa-GCCCGGGCga---------CCGC- -5'
6495 3' -60.5 NC_001847.1 + 104891 0.74 0.257281
Target:  5'- -uGGCGGCGAgcgccccgCgGGGCCCGCgcGGCGg -3'
miRNA:   3'- agUCGUCGCUaa------G-CCCGGGCGa-CCGC- -5'
6495 3' -60.5 NC_001847.1 + 81231 0.74 0.245446
Target:  5'- gCGGCAGCGGcggCGGGCCagGCUGGg- -3'
miRNA:   3'- aGUCGUCGCUaa-GCCCGGg-CGACCgc -5'
6495 3' -60.5 NC_001847.1 + 36859 0.77 0.173095
Target:  5'- cUCGGCGGCGGccgagcucuacgCGGGgCUGCUGGCGa -3'
miRNA:   3'- -AGUCGUCGCUaa----------GCCCgGGCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 102881 0.76 0.192918
Target:  5'- uUCGGCgcGGCGGgccCGGGCCCGCUcugGGCu -3'
miRNA:   3'- -AGUCG--UCGCUaa-GCCCGGGCGA---CCGc -5'
6495 3' -60.5 NC_001847.1 + 43128 0.76 0.197693
Target:  5'- --cGCAGaCGGcgCGGGCCCGCgGGCGc -3'
miRNA:   3'- aguCGUC-GCUaaGCCCGGGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 29277 0.76 0.20257
Target:  5'- -uGGCGGCGAUUCGcGCggCGCUGGCGg -3'
miRNA:   3'- agUCGUCGCUAAGCcCGg-GCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 32674 0.75 0.212639
Target:  5'- cCGGCGGCG---CGGGCCCGCUcgagcugugcGGCGc -3'
miRNA:   3'- aGUCGUCGCuaaGCCCGGGCGA----------CCGC- -5'
6495 3' -60.5 NC_001847.1 + 69326 0.75 0.223134
Target:  5'- -gGGC-GCGGgccUCGGGCgCUGCUGGCGg -3'
miRNA:   3'- agUCGuCGCUa--AGCCCG-GGCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 43091 0.75 0.228545
Target:  5'- cUCGGCGGCGGa--GGcGCCCGgaGGCGc -3'
miRNA:   3'- -AGUCGUCGCUaagCC-CGGGCgaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 43232 0.75 0.234067
Target:  5'- cCGGUGGCGGUggGGGCgCGCgGGCGg -3'
miRNA:   3'- aGUCGUCGCUAagCCCGgGCGaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.