miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6495 3' -60.5 NC_001847.1 + 68 0.76 0.192918
Target:  5'- uUCGGCgcGGCGGgccCGGGCCCGCUcugGGCu -3'
miRNA:   3'- -AGUCG--UCGCUaa-GCCCGGGCGA---CCGc -5'
6495 3' -60.5 NC_001847.1 + 1407 0.69 0.519253
Target:  5'- cUCGcGCGGCGGcaCGGGCaCCGC-GGUGc -3'
miRNA:   3'- -AGU-CGUCGCUaaGCCCG-GGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 1490 0.67 0.628063
Target:  5'- gCAGCGGCGGcgccUCGGGguagagCCGCgcguaGGCGg -3'
miRNA:   3'- aGUCGUCGCUa---AGCCCg-----GGCGa----CCGC- -5'
6495 3' -60.5 NC_001847.1 + 1934 0.68 0.528902
Target:  5'- gCGGCGGCcacUCGGG-CCGCcGGCGc -3'
miRNA:   3'- aGUCGUCGcuaAGCCCgGGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 2078 0.74 0.257281
Target:  5'- -uGGCGGCGAgcgccccgCgGGGCCCGCgcGGCGg -3'
miRNA:   3'- agUCGUCGCUaa------G-CCCGGGCGa-CCGC- -5'
6495 3' -60.5 NC_001847.1 + 2123 0.67 0.628063
Target:  5'- cUCGGcCAGCGccUCGGGgUCGaaGGCGa -3'
miRNA:   3'- -AGUC-GUCGCuaAGCCCgGGCgaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 2291 0.68 0.555267
Target:  5'- gUCGGCGGCGGggccgccgggcggcaUGGGCCCcagcacGCgGGCGg -3'
miRNA:   3'- -AGUCGUCGCUaa-------------GCCCGGG------CGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 3155 0.68 0.537643
Target:  5'- cCGGCGGCGcggCGGGCCgccuccagcgccuCGCggcaGGCGa -3'
miRNA:   3'- aGUCGUCGCuaaGCCCGG-------------GCGa---CCGC- -5'
6495 3' -60.5 NC_001847.1 + 3304 0.69 0.472148
Target:  5'- cUCGGCGagcGCGGcgCGGGCgCCGCUgccgccGGCGc -3'
miRNA:   3'- -AGUCGU---CGCUaaGCCCG-GGCGA------CCGC- -5'
6495 3' -60.5 NC_001847.1 + 3579 0.68 0.568101
Target:  5'- cCAGCuGCaGGUcCGGGCCCGCgagcuucGCGc -3'
miRNA:   3'- aGUCGuCG-CUAaGCCCGGGCGac-----CGC- -5'
6495 3' -60.5 NC_001847.1 + 3876 0.68 0.578023
Target:  5'- gCGGCGGCGGcccgUCGcgcGGCgCCGC-GGCGu -3'
miRNA:   3'- aGUCGUCGCUa---AGC---CCG-GGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 3969 0.69 0.494505
Target:  5'- cCGGCGGCGAgggcgcCGGGggccgggcgcgcggcCCCGCggGGCGc -3'
miRNA:   3'- aGUCGUCGCUaa----GCCC---------------GGGCGa-CCGC- -5'
6495 3' -60.5 NC_001847.1 + 4158 0.69 0.490744
Target:  5'- gCuGCAGUcc-UCGGGCCCGCUguccucggacccGGCGu -3'
miRNA:   3'- aGuCGUCGcuaAGCCCGGGCGA------------CCGC- -5'
6495 3' -60.5 NC_001847.1 + 4164 0.66 0.67717
Target:  5'- cCAGCgAGCGGgccuuguUUUGGGCCgCGCgcccgugGGCc -3'
miRNA:   3'- aGUCG-UCGCU-------AAGCCCGG-GCGa------CCGc -5'
6495 3' -60.5 NC_001847.1 + 4623 0.68 0.558222
Target:  5'- cUCGGC-GCGGgc--GGCCCGCcGGCGc -3'
miRNA:   3'- -AGUCGuCGCUaagcCCGGGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 5172 0.68 0.538617
Target:  5'- aUCGGCGGCGAuUUCGGGgaacagcgCCGCgagcgcGGCa -3'
miRNA:   3'- -AGUCGUCGCU-AAGCCCg-------GGCGa-----CCGc -5'
6495 3' -60.5 NC_001847.1 + 5355 0.69 0.519253
Target:  5'- gUCGcGCGGCGcggcCGGGCCCagGCUccGGCGg -3'
miRNA:   3'- -AGU-CGUCGCuaa-GCCCGGG--CGA--CCGC- -5'
6495 3' -60.5 NC_001847.1 + 5934 0.69 0.509673
Target:  5'- -gGGCGGCGGacgaCGGGCCCGCccGCu -3'
miRNA:   3'- agUCGUCGCUaa--GCCCGGGCGacCGc -5'
6495 3' -60.5 NC_001847.1 + 6969 0.67 0.607988
Target:  5'- gCGGCGGCGcUUCc-GCCCGCgGGCc -3'
miRNA:   3'- aGUCGUCGCuAAGccCGGGCGaCCGc -5'
6495 3' -60.5 NC_001847.1 + 7237 0.66 0.69801
Target:  5'- gCAGCGGCuggUCGGGUggCUGUgcgGGCGc -3'
miRNA:   3'- aGUCGUCGcuaAGCCCG--GGCGa--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.