miRNA display CGI


Results 1 - 20 of 341 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6495 3' -60.5 NC_001847.1 + 135070 0.67 0.628063
Target:  5'- cCAG-AGCGGgccCGGGCCCGCc-GCGc -3'
miRNA:   3'- aGUCgUCGCUaa-GCCCGGGCGacCGC- -5'
6495 3' -60.5 NC_001847.1 + 135006 0.67 0.61802
Target:  5'- cCGGCcGgGGccCGaGGCCCGCgGGCGg -3'
miRNA:   3'- aGUCGuCgCUaaGC-CCGGGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 134875 0.7 0.418636
Target:  5'- cUCGGCGGCccccgGGcUCGGGCCC-CUGgGCGc -3'
miRNA:   3'- -AGUCGUCG-----CUaAGCCCGGGcGAC-CGC- -5'
6495 3' -60.5 NC_001847.1 + 134778 0.71 0.41008
Target:  5'- gCGGCGcGCGGggCGGGCCCcggGGCGc -3'
miRNA:   3'- aGUCGU-CGCUaaGCCCGGGcgaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 132040 0.67 0.607988
Target:  5'- --cGCGGCGGgcCGcGGCCUGCcGGCc -3'
miRNA:   3'- aguCGUCGCUaaGC-CCGGGCGaCCGc -5'
6495 3' -60.5 NC_001847.1 + 131555 0.68 0.538617
Target:  5'- -gAGC-GCGAagcucgCGGGCCCggaccugcaGCUGGCGc -3'
miRNA:   3'- agUCGuCGCUaa----GCCCGGG---------CGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 131438 0.68 0.558222
Target:  5'- --cGCGGCGGccgCgGGGCCCGC-GGCc -3'
miRNA:   3'- aguCGUCGCUaa-G-CCCGGGCGaCCGc -5'
6495 3' -60.5 NC_001847.1 + 131367 0.67 0.61802
Target:  5'- uUCGGCGGCG---CGGGCgacacCCGCgagGGCc -3'
miRNA:   3'- -AGUCGUCGCuaaGCCCG-----GGCGa--CCGc -5'
6495 3' -60.5 NC_001847.1 + 131002 0.73 0.281048
Target:  5'- aCuGCAGCGAUgcCGGGCCCGaggacgaugggGGCGa -3'
miRNA:   3'- aGuCGUCGCUAa-GCCCGGGCga---------CCGC- -5'
6495 3' -60.5 NC_001847.1 + 130910 0.66 0.688111
Target:  5'- -gGGCGGCGGUgcccUCGGGgCCaggaccgagGCcGGCGa -3'
miRNA:   3'- agUCGUCGCUA----AGCCCgGG---------CGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 130494 0.7 0.4273
Target:  5'- --cGCGGCGcgUCGGGCUgaggcgcgcgagCGCcGGCGg -3'
miRNA:   3'- aguCGUCGCuaAGCCCGG------------GCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 129354 0.66 0.678167
Target:  5'- -aAGC-GCGGUgcCGGGCCCGg-GGCu -3'
miRNA:   3'- agUCGuCGCUAa-GCCCGGGCgaCCGc -5'
6495 3' -60.5 NC_001847.1 + 129298 0.68 0.54252
Target:  5'- gUAGgGGCGGgccuggugcaaggCGGGCCUGCcgGGCGc -3'
miRNA:   3'- aGUCgUCGCUaa-----------GCCCGGGCGa-CCGC- -5'
6495 3' -60.5 NC_001847.1 + 129204 0.66 0.688111
Target:  5'- -aAGCAGCGgg-CGGGCCCGUcguccGCc -3'
miRNA:   3'- agUCGUCGCuaaGCCCGGGCGac---CGc -5'
6495 3' -60.5 NC_001847.1 + 128795 0.66 0.64815
Target:  5'- gUCAGaccagGGCGGgcgggCGGGCgCGCaGGCGc -3'
miRNA:   3'- -AGUCg----UCGCUaa---GCCCGgGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 127073 0.66 0.65918
Target:  5'- --cGCGGCGGUgccccccucugcgcgCGGGCCgCGC-GGCu -3'
miRNA:   3'- aguCGUCGCUAa--------------GCCCGG-GCGaCCGc -5'
6495 3' -60.5 NC_001847.1 + 126778 0.67 0.597974
Target:  5'- cCGGCguuGGUGGUUgccaUGGGCCgGCUuGGCGc -3'
miRNA:   3'- aGUCG---UCGCUAA----GCCCGGgCGA-CCGC- -5'
6495 3' -60.5 NC_001847.1 + 126236 0.66 0.668187
Target:  5'- gUCGGCGGgGcgUcCGGGgUCGUcGGCGg -3'
miRNA:   3'- -AGUCGUCgCuaA-GCCCgGGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 126128 0.68 0.558222
Target:  5'- cUAGCAGgGggUCGcGGCCgCGCacgaUGGCa -3'
miRNA:   3'- aGUCGUCgCuaAGC-CCGG-GCG----ACCGc -5'
6495 3' -60.5 NC_001847.1 + 125915 0.75 0.223134
Target:  5'- aUCAGCcccgcccccGCGAcuccuuuuuaUUGGGCCCGCUGGCGc -3'
miRNA:   3'- -AGUCGu--------CGCUa---------AGCCCGGGCGACCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.