miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6495 3' -60.5 NC_001847.1 + 8463 0.66 0.64815
Target:  5'- -aGGCGGCGc--CGGGCCgGg-GGCGg -3'
miRNA:   3'- agUCGUCGCuaaGCCCGGgCgaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 8493 0.67 0.585988
Target:  5'- cCGGgGGCGGggccccuuacgUGGGCCCcCUGGCa -3'
miRNA:   3'- aGUCgUCGCUaa---------GCCCGGGcGACCGc -5'
6495 3' -60.5 NC_001847.1 + 10559 0.68 0.528902
Target:  5'- cCGGcCGGCGc--CGGGCCCGgCgccGGCGg -3'
miRNA:   3'- aGUC-GUCGCuaaGCCCGGGC-Ga--CCGC- -5'
6495 3' -60.5 NC_001847.1 + 10913 0.67 0.638109
Target:  5'- gCGGCGcgguacuaccGCGAggCGaGCCgGCUGGCGc -3'
miRNA:   3'- aGUCGU----------CGCUaaGCcCGGgCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 11892 0.66 0.678167
Target:  5'- aUCuGguGCGGccgGGGUCCGCgcUGGCGc -3'
miRNA:   3'- -AGuCguCGCUaagCCCGGGCG--ACCGC- -5'
6495 3' -60.5 NC_001847.1 + 11962 0.69 0.509673
Target:  5'- cCAG-AGCGAcUCGaGGCgugCCGUUGGCGg -3'
miRNA:   3'- aGUCgUCGCUaAGC-CCG---GGCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 12559 0.68 0.568101
Target:  5'- gCAGguGCGcaaCGGGCgCCGCguacgcGGCGc -3'
miRNA:   3'- aGUCguCGCuaaGCCCG-GGCGa-----CCGC- -5'
6495 3' -60.5 NC_001847.1 + 13152 0.69 0.519253
Target:  5'- gCGGcCGGCGGUU-GGG-CUGCUGGCa -3'
miRNA:   3'- aGUC-GUCGCUAAgCCCgGGCGACCGc -5'
6495 3' -60.5 NC_001847.1 + 13225 0.68 0.578023
Target:  5'- cUCGGCGagcuccGCGAUggccagCgGGGCCaCGCgGGCGg -3'
miRNA:   3'- -AGUCGU------CGCUAa-----G-CCCGG-GCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 13339 0.67 0.597974
Target:  5'- -gGGCGGCGAgcaGGcGCCCGCgaGGaCGc -3'
miRNA:   3'- agUCGUCGCUaagCC-CGGGCGa-CC-GC- -5'
6495 3' -60.5 NC_001847.1 + 13711 0.71 0.368976
Target:  5'- cCGGCGGCGG-UCGGGC-CGCUcaacGGCu -3'
miRNA:   3'- aGUCGUCGCUaAGCCCGgGCGA----CCGc -5'
6495 3' -60.5 NC_001847.1 + 14127 0.72 0.353344
Target:  5'- gUCAcgGGCGAUgggCgGGGCCCGCgccugGGCGg -3'
miRNA:   3'- -AGUcgUCGCUAa--G-CCCGGGCGa----CCGC- -5'
6495 3' -60.5 NC_001847.1 + 14330 0.66 0.658178
Target:  5'- --cGCGGUGGggcCGGGCgUGgUGGCGg -3'
miRNA:   3'- aguCGUCGCUaa-GCCCGgGCgACCGC- -5'
6495 3' -60.5 NC_001847.1 + 14527 0.66 0.668187
Target:  5'- cUCGGCGGCGc-UCGcuGCCCGC-GGUGc -3'
miRNA:   3'- -AGUCGUCGCuaAGCc-CGGGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 14807 0.66 0.668187
Target:  5'- gCAGCGGCGGagcugcgCGGcGCCCuGCgcgcGGUGg -3'
miRNA:   3'- aGUCGUCGCUaa-----GCC-CGGG-CGa---CCGC- -5'
6495 3' -60.5 NC_001847.1 + 14940 0.67 0.628063
Target:  5'- -aGGCuGCGAg-CGGGCgCCGCUcGCGc -3'
miRNA:   3'- agUCGuCGCUaaGCCCG-GGCGAcCGC- -5'
6495 3' -60.5 NC_001847.1 + 15009 0.67 0.598974
Target:  5'- cUCGGCcGCGGUg-GGGCCgCGCgagccgcggccgccgGGCGa -3'
miRNA:   3'- -AGUCGuCGCUAagCCCGG-GCGa--------------CCGC- -5'
6495 3' -60.5 NC_001847.1 + 15523 0.7 0.418636
Target:  5'- cUCGGCGG-GAgccgCGGG-CUGCUGGCGc -3'
miRNA:   3'- -AGUCGUCgCUaa--GCCCgGGCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 16842 0.69 0.494505
Target:  5'- cCAGUGGCGGUgcagguguagucgaCGGGCCCGUcGGUu -3'
miRNA:   3'- aGUCGUCGCUAa-------------GCCCGGGCGaCCGc -5'
6495 3' -60.5 NC_001847.1 + 17020 1.09 0.000862
Target:  5'- aUCAGCAGCGAUUCGGGCCCGCUGGCGg -3'
miRNA:   3'- -AGUCGUCGCUAAGCCCGGGCGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.