miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6495 3' -60.5 NC_001847.1 + 33708 0.66 0.668187
Target:  5'- --cGCGGCGGcgCGuGGCCgaGCUGGgGg -3'
miRNA:   3'- aguCGUCGCUaaGC-CCGGg-CGACCgC- -5'
6495 3' -60.5 NC_001847.1 + 129204 0.66 0.688111
Target:  5'- -aAGCAGCGgg-CGGGCCCGUcguccGCc -3'
miRNA:   3'- agUCGUCGCuaaGCCCGGGCGac---CGc -5'
6495 3' -60.5 NC_001847.1 + 130910 0.66 0.688111
Target:  5'- -gGGCGGCGGUgcccUCGGGgCCaggaccgagGCcGGCGa -3'
miRNA:   3'- agUCGUCGCUA----AGCCCgGG---------CGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 34783 0.66 0.64815
Target:  5'- gCGGCcGCGGcgCGcGGCuacgacccgcggCCGCUGGCGc -3'
miRNA:   3'- aGUCGuCGCUaaGC-CCG------------GGCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 7237 0.66 0.69801
Target:  5'- gCAGCGGCuggUCGGGUggCUGUgcgGGCGc -3'
miRNA:   3'- aGUCGUCGcuaAGCCCG--GGCGa--CCGC- -5'
6495 3' -60.5 NC_001847.1 + 50855 0.66 0.688111
Target:  5'- aCAGC-GCGcUUCGGcGCCCG--GGCGc -3'
miRNA:   3'- aGUCGuCGCuAAGCC-CGGGCgaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 124923 0.66 0.668187
Target:  5'- cCGGgGGCGAcagCGGGCgCGCccugGGCc -3'
miRNA:   3'- aGUCgUCGCUaa-GCCCGgGCGa---CCGc -5'
6495 3' -60.5 NC_001847.1 + 111276 0.66 0.64815
Target:  5'- -aGGCGGCGc--CGGGCCgGg-GGCGg -3'
miRNA:   3'- agUCGUCGCuaaGCCCGGgCgaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 49034 0.66 0.657176
Target:  5'- cCAGCGGCGAgccgUgGuGGCgcgcagcucacggCCGCgGGCGg -3'
miRNA:   3'- aGUCGUCGCUa---AgC-CCG-------------GGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 33222 0.66 0.668187
Target:  5'- cUCGGCuuGGCGccgcgcCGGGCgCCGC-GGCGc -3'
miRNA:   3'- -AGUCG--UCGCuaa---GCCCG-GGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 126236 0.66 0.668187
Target:  5'- gUCGGCGGgGcgUcCGGGgUCGUcGGCGg -3'
miRNA:   3'- -AGUCGUCgCuaA-GCCCgGGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 78706 0.66 0.658178
Target:  5'- gCAGCAcGCGAgugCGGGCggucuuCCGCgacgcGGUGg -3'
miRNA:   3'- aGUCGU-CGCUaa-GCCCG------GGCGa----CCGC- -5'
6495 3' -60.5 NC_001847.1 + 53017 0.66 0.688111
Target:  5'- aCAGCGGCGGccgcugcgcgcUCGGGCCuCGgcuccgagcCUGGCc -3'
miRNA:   3'- aGUCGUCGCUa----------AGCCCGG-GC---------GACCGc -5'
6495 3' -60.5 NC_001847.1 + 51601 0.66 0.698997
Target:  5'- gCGGCGGCGugaacauucucagCGGG-CCGCUGGg- -3'
miRNA:   3'- aGUCGUCGCuaa----------GCCCgGGCGACCgc -5'
6495 3' -60.5 NC_001847.1 + 49202 0.66 0.662184
Target:  5'- aCGGUAGCccucgcgccgGGGCCCGCgGGCu -3'
miRNA:   3'- aGUCGUCGcuaag-----CCCGGGCGaCCGc -5'
6495 3' -60.5 NC_001847.1 + 53091 0.66 0.668187
Target:  5'- cUCAGCguucGGCGGggCGgcGGCCCGCcagcGGCu -3'
miRNA:   3'- -AGUCG----UCGCUaaGC--CCGGGCGa---CCGc -5'
6495 3' -60.5 NC_001847.1 + 4164 0.66 0.67717
Target:  5'- cCAGCgAGCGGgccuuguUUUGGGCCgCGCgcccgugGGCc -3'
miRNA:   3'- aGUCG-UCGCU-------AAGCCCGG-GCGa------CCGc -5'
6495 3' -60.5 NC_001847.1 + 26031 0.66 0.697023
Target:  5'- gCGGCAGCaaaaGGUgCGGGCCaggugcuCGCUcGGCa -3'
miRNA:   3'- aGUCGUCG----CUAaGCCCGG-------GCGA-CCGc -5'
6495 3' -60.5 NC_001847.1 + 100644 0.66 0.69801
Target:  5'- gCuGCGGCGcca-GGGCCgCGCUGcuGCGg -3'
miRNA:   3'- aGuCGUCGCuaagCCCGG-GCGAC--CGC- -5'
6495 3' -60.5 NC_001847.1 + 52368 0.66 0.658178
Target:  5'- aCGGCAGCaac---GGCgCGCUGGCGc -3'
miRNA:   3'- aGUCGUCGcuaagcCCGgGCGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.