miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6495 3' -60.5 NC_001847.1 + 61455 0.66 0.69801
Target:  5'- --cGCGGCGAggCGGucgcgcagcagcGCCgcguCGCUGGCGc -3'
miRNA:   3'- aguCGUCGCUaaGCC------------CGG----GCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 22110 0.66 0.668187
Target:  5'- cCGGgGGCGAcagCGGGCgCGCccugGGCc -3'
miRNA:   3'- aGUCgUCGCUaa-GCCCGgGCGa---CCGc -5'
6495 3' -60.5 NC_001847.1 + 65737 0.66 0.668187
Target:  5'- gCAGgaaCAGCGc--CGGGCCCGCaaaGGCc -3'
miRNA:   3'- aGUC---GUCGCuaaGCCCGGGCGa--CCGc -5'
6495 3' -60.5 NC_001847.1 + 17020 1.09 0.000862
Target:  5'- aUCAGCAGCGAUUCGGGCCCGCUGGCGg -3'
miRNA:   3'- -AGUCGUCGCUAAGCCCGGGCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 124645 0.66 0.69801
Target:  5'- gCAGCAGCG---CGGGgCCGUcGGgGa -3'
miRNA:   3'- aGUCGUCGCuaaGCCCgGGCGaCCgC- -5'
6495 3' -60.5 NC_001847.1 + 86377 0.66 0.688111
Target:  5'- -aGGCGGCGGgccgcggcggCGGGCgCGC-GGCu -3'
miRNA:   3'- agUCGUCGCUaa--------GCCCGgGCGaCCGc -5'
6495 3' -60.5 NC_001847.1 + 26391 0.66 0.688111
Target:  5'- -aAGCAGCGgg-CGGGCCCGUcguccGCc -3'
miRNA:   3'- agUCGUCGCuaaGCCCGGGCGac---CGc -5'
6495 3' -60.5 NC_001847.1 + 129354 0.66 0.678167
Target:  5'- -aAGC-GCGGUgcCGGGCCCGg-GGCu -3'
miRNA:   3'- agUCGuCGCUAa-GCCCGGGCgaCCGc -5'
6495 3' -60.5 NC_001847.1 + 62551 0.66 0.678167
Target:  5'- cCAGCAGCGcguUUUGGcccaGCCCGCgcaucGCGu -3'
miRNA:   3'- aGUCGUCGCu--AAGCC----CGGGCGac---CGC- -5'
6495 3' -60.5 NC_001847.1 + 23423 0.66 0.668187
Target:  5'- gUCGGCGGgGcgUcCGGGgUCGUcGGCGg -3'
miRNA:   3'- -AGUCGUCgCuaA-GCCCgGGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 119580 0.66 0.678167
Target:  5'- gCAGCGGCGGc-CGcGGCCCGaC-GGCc -3'
miRNA:   3'- aGUCGUCGCUaaGC-CCGGGC-GaCCGc -5'
6495 3' -60.5 NC_001847.1 + 96823 0.66 0.678167
Target:  5'- gCGGCGGCGAccgcgCGGGC--GUUGGCu -3'
miRNA:   3'- aGUCGUCGCUaa---GCCCGggCGACCGc -5'
6495 3' -60.5 NC_001847.1 + 96429 0.66 0.69801
Target:  5'- cCGGCGGCaGGcgCGGcCCCGgaGGCa -3'
miRNA:   3'- aGUCGUCG-CUaaGCCcGGGCgaCCGc -5'
6495 3' -60.5 NC_001847.1 + 81855 0.66 0.678167
Target:  5'- gUCAGCGGCGugaggCGGacGCgCGCcugGGCGc -3'
miRNA:   3'- -AGUCGUCGCuaa--GCC--CGgGCGa--CCGC- -5'
6495 3' -60.5 NC_001847.1 + 111074 0.66 0.69801
Target:  5'- gCuGCcGCGGgccUGGGCCCGgCUGcGCGa -3'
miRNA:   3'- aGuCGuCGCUaa-GCCCGGGC-GAC-CGC- -5'
6495 3' -60.5 NC_001847.1 + 125503 0.66 0.678167
Target:  5'- cCGGCugcucgAGCGg--CGGGCCgGCgcGGCGg -3'
miRNA:   3'- aGUCG------UCGCuaaGCCCGGgCGa-CCGC- -5'
6495 3' -60.5 NC_001847.1 + 58204 0.66 0.668187
Target:  5'- cCAGCAgGCGcuccgggCGGaucuGCCCGCcgGGCGg -3'
miRNA:   3'- aGUCGU-CGCuaa----GCC----CGGGCGa-CCGC- -5'
6495 3' -60.5 NC_001847.1 + 14527 0.66 0.668187
Target:  5'- cUCGGCGGCGc-UCGcuGCCCGC-GGUGc -3'
miRNA:   3'- -AGUCGUCGCuaAGCc-CGGGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 20070 0.66 0.69801
Target:  5'- -gAGCGGCGuggCGGcuCCCGC-GGCGc -3'
miRNA:   3'- agUCGUCGCuaaGCCc-GGGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 28097 0.66 0.688111
Target:  5'- -gGGCGGCGGUgcccUCGGGgCCaggaccgagGCcGGCGa -3'
miRNA:   3'- agUCGUCGCUA----AGCCCgGG---------CGaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.