miRNA display CGI


Results 41 - 60 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6495 5' -56.7 NC_001847.1 + 119590 0.66 0.83525
Target:  5'- -cCGC-----GGCCCGACGG-CCGcGCg -3'
miRNA:   3'- aaGCGauuucUCGGGCUGCCaGGC-CG- -5'
6495 5' -56.7 NC_001847.1 + 89 0.66 0.83525
Target:  5'- -cCGCUcu-GGGCuCCGccccugGGUCCGGCg -3'
miRNA:   3'- aaGCGAuuuCUCG-GGCug----CCAGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 95260 0.66 0.83525
Target:  5'- -gCGCgaucGGGGGCgCGAuCGGgggcgCCGGCa -3'
miRNA:   3'- aaGCGau--UUCUCGgGCU-GCCa----GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 100604 0.66 0.83525
Target:  5'- gUgGCcccAAGcGCCCGGCGGgcggcgcaucgCCGGCg -3'
miRNA:   3'- aAgCGau-UUCuCGGGCUGCCa----------GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 101216 0.66 0.83525
Target:  5'- cUCGCgguaccggccGAAGAGCUgccacaGGCGGUCCuGCa -3'
miRNA:   3'- aAGCGa---------UUUCUCGGg-----CUGCCAGGcCG- -5'
6495 5' -56.7 NC_001847.1 + 13958 0.67 0.826843
Target:  5'- --gGCUGcggcccguGGGAGCCCGccccUGG-CCGGCa -3'
miRNA:   3'- aagCGAU--------UUCUCGGGCu---GCCaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 22792 0.67 0.826843
Target:  5'- cUUCGCgGAAcAGCUCGuagauGCGGgCCGGCg -3'
miRNA:   3'- -AAGCGaUUUcUCGGGC-----UGCCaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 116950 0.67 0.826843
Target:  5'- -cCGCU-----GCCUGGCGGugcUCCGGCu -3'
miRNA:   3'- aaGCGAuuucuCGGGCUGCC---AGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 37832 0.67 0.826843
Target:  5'- cUCGCUccucggacGGAGGcacgcGCCCcGCGGUcCCGGUg -3'
miRNA:   3'- aAGCGA--------UUUCU-----CGGGcUGCCA-GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 95498 0.67 0.826843
Target:  5'- aUUUGCgcc---GCCCGugGGcCUGGCg -3'
miRNA:   3'- -AAGCGauuucuCGGGCugCCaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 53696 0.67 0.826843
Target:  5'- -cCGCgaaccagGgcGAGUCUGugGG-CCGGCg -3'
miRNA:   3'- aaGCGa------UuuCUCGGGCugCCaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 129230 0.67 0.821713
Target:  5'- -cCGCUAAuGGGCCCGggcgcacaaucugcgACGG-CgCGGCc -3'
miRNA:   3'- aaGCGAUUuCUCGGGC---------------UGCCaG-GCCG- -5'
6495 5' -56.7 NC_001847.1 + 113379 0.67 0.818258
Target:  5'- -gCGCc---GGGCCCGGCG--CCGGCg -3'
miRNA:   3'- aaGCGauuuCUCGGGCUGCcaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 56851 0.67 0.818258
Target:  5'- -cCGCgccgucuGcGCCCGGCGGcCCGGg -3'
miRNA:   3'- aaGCGauuu---CuCGGGCUGCCaGGCCg -5'
6495 5' -56.7 NC_001847.1 + 50470 0.67 0.818258
Target:  5'- -cCGCUGccGcAGaCCGGCgccGGUCCGGCc -3'
miRNA:   3'- aaGCGAUuuC-UCgGGCUG---CCAGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 10566 0.67 0.818258
Target:  5'- -gCGCc---GGGCCCGGCG--CCGGCg -3'
miRNA:   3'- aaGCGauuuCUCGGGCUGCcaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 82069 0.67 0.818258
Target:  5'- -aCGCUGAGccGGGCUCGGC-GUCUGGg -3'
miRNA:   3'- aaGCGAUUU--CUCGGGCUGcCAGGCCg -5'
6495 5' -56.7 NC_001847.1 + 42005 0.67 0.818258
Target:  5'- -cCGC-GGGGGGCgCCGGCaGcCCGGCc -3'
miRNA:   3'- aaGCGaUUUCUCG-GGCUGcCaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 55882 0.67 0.818258
Target:  5'- cUUCGCccgc-GGCCCGACG--CCGGCu -3'
miRNA:   3'- -AAGCGauuucUCGGGCUGCcaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 132693 0.67 0.818258
Target:  5'- -cCGCUcgaucGGGAGCUCGcuGCGG-CUGGCg -3'
miRNA:   3'- aaGCGAu----UUCUCGGGC--UGCCaGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.