Results 21 - 40 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6495 | 5' | -56.7 | NC_001847.1 | + | 5046 | 0.66 | 0.851494 |
Target: 5'- cUCGUccc--AGCCCGcgucGCGGUCgGGCg -3' miRNA: 3'- aAGCGauuucUCGGGC----UGCCAGgCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 104467 | 0.66 | 0.851494 |
Target: 5'- -aCGUgcgccuGCCCGACGG-CCGGg -3' miRNA: 3'- aaGCGauuucuCGGGCUGCCaGGCCg -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 83747 | 0.66 | 0.851494 |
Target: 5'- -gCGCUAuuGGAcucGCCaCGugGGacaCCGGCg -3' miRNA: 3'- aaGCGAUu-UCU---CGG-GCugCCa--GGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 79998 | 0.66 | 0.851494 |
Target: 5'- -cCGCUGGGGGGCUCuacgcgcGCGcGUuuGGCg -3' miRNA: 3'- aaGCGAUUUCUCGGGc------UGC-CAggCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 111071 | 0.66 | 0.851494 |
Target: 5'- cUCGCUGccgcgggccuGGGCCCGGCugcgcgagaaGGUCgcgCGGCa -3' miRNA: 3'- aAGCGAUuu--------CUCGGGCUG----------CCAG---GCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 1654 | 0.66 | 0.851494 |
Target: 5'- -aCGUgcgccuGCCCGACGG-CCGGg -3' miRNA: 3'- aaGCGauuucuCGGGCUGCCaGGCCg -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 4155 | 0.66 | 0.851494 |
Target: 5'- aUCGCUGcaguccucGGGCCCGcuguccuCGGacCCGGCg -3' miRNA: 3'- aAGCGAUuu------CUCGGGCu------GCCa-GGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 133180 | 0.66 | 0.851494 |
Target: 5'- -gCGCUGgcGGcgccGCCCGGCGaGgacgagcgCCGGCg -3' miRNA: 3'- aaGCGAUuuCU----CGGGCUGC-Ca-------GGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 11312 | 0.66 | 0.851494 |
Target: 5'- -gCGCgcccgccGAGgCCGGCGGgcggCUGGCg -3' miRNA: 3'- aaGCGauuu---CUCgGGCUGCCa---GGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 106750 | 0.66 | 0.8507 |
Target: 5'- -gCGCU--GGcGCCgCGGCGGggggggcgccgucUCCGGCg -3' miRNA: 3'- aaGCGAuuUCuCGG-GCUGCC-------------AGGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 3937 | 0.66 | 0.8507 |
Target: 5'- -gCGCU--GGcGCCgCGGCGGggggggcgccgucUCCGGCg -3' miRNA: 3'- aaGCGAuuUCuCGG-GCUGCC-------------AGGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 43081 | 0.66 | 0.849107 |
Target: 5'- -gCGCUGcuggcucggcggcgGAGGcGCCCGGaGGcgCCGGCg -3' miRNA: 3'- aaGCGAU--------------UUCU-CGGGCUgCCa-GGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 55726 | 0.66 | 0.843469 |
Target: 5'- -cCGCccucGGGcGCCaCGGUGGUCCGGCu -3' miRNA: 3'- aaGCGau--UUCuCGG-GCUGCCAGGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 18368 | 0.66 | 0.843469 |
Target: 5'- aUCGUcGgcGGGCCCGAUGccUCGGCg -3' miRNA: 3'- aAGCGaUuuCUCGGGCUGCcaGGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 12341 | 0.66 | 0.843469 |
Target: 5'- cUCGCUGGugagcgguGGGCCUGGCucGGgagcgUCGGCg -3' miRNA: 3'- aAGCGAUUu-------CUCGGGCUG--CCa----GGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 86178 | 0.66 | 0.843469 |
Target: 5'- -cCGUUAAAGcGUCUGACGGcaCCGGg -3' miRNA: 3'- aaGCGAUUUCuCGGGCUGCCa-GGCCg -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 102902 | 0.66 | 0.83525 |
Target: 5'- -cCGCUcu-GGGCuCCGccccugGGUCCGGCg -3' miRNA: 3'- aaGCGAuuuCUCG-GGCug----CCAGGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 101869 | 0.66 | 0.83525 |
Target: 5'- gUCGCgGAGGAGCUCGccuuugcgcGCGGaCCgcGGCa -3' miRNA: 3'- aAGCGaUUUCUCGGGC---------UGCCaGG--CCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 58242 | 0.66 | 0.83525 |
Target: 5'- -gCGCgc--GAGCUCGGCcggauuagGGUUCGGCg -3' miRNA: 3'- aaGCGauuuCUCGGGCUG--------CCAGGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 55516 | 0.66 | 0.83525 |
Target: 5'- -cUGCUGgcGGcGCCCGccGCGGggcgaCCGGCg -3' miRNA: 3'- aaGCGAUuuCU-CGGGC--UGCCa----GGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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