miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6495 5' -56.7 NC_001847.1 + 14178 0.67 0.782291
Target:  5'- -gCGCUAAaggcacgggaGGGGCUggCGGCGGggCUGGCg -3'
miRNA:   3'- aaGCGAUU----------UCUCGG--GCUGCCa-GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 14328 0.66 0.866934
Target:  5'- cUCGCgguGGGGCCgGGCGuGguggCGGCg -3'
miRNA:   3'- aAGCGauuUCUCGGgCUGC-Cag--GCCG- -5'
6495 5' -56.7 NC_001847.1 + 17026 0.69 0.673932
Target:  5'- --aGCgauucGGGCCCGcugGCGGUCCGGa -3'
miRNA:   3'- aagCGauuu-CUCGGGC---UGCCAGGCCg -5'
6495 5' -56.7 NC_001847.1 + 17063 1.1 0.001845
Target:  5'- uUUCGCUAAAGAGCCCGACGGUCCGGCa -3'
miRNA:   3'- -AAGCGAUUUCUCGGGCUGCCAGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 17287 0.67 0.809502
Target:  5'- -gCGCgu-GGAGCgCGGCGGguaguacUCGGCg -3'
miRNA:   3'- aaGCGauuUCUCGgGCUGCCa------GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 17352 0.67 0.800583
Target:  5'- -gCGCUGGcuGGGGUUCGACGGaaacagCgGGCg -3'
miRNA:   3'- aaGCGAUU--UCUCGGGCUGCCa-----GgCCG- -5'
6495 5' -56.7 NC_001847.1 + 18368 0.66 0.843469
Target:  5'- aUCGUcGgcGGGCCCGAUGccUCGGCg -3'
miRNA:   3'- aAGCGaUuuCUCGGGCUGCcaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 21688 0.7 0.622553
Target:  5'- aUgGC-GAGGAGCCCGGCGaGgagCCGGa -3'
miRNA:   3'- aAgCGaUUUCUCGGGCUGC-Ca--GGCCg -5'
6495 5' -56.7 NC_001847.1 + 21755 0.66 0.866934
Target:  5'- -gCGCgcgGGGGGGCcgCCGGCgccgGGcCCGGCg -3'
miRNA:   3'- aaGCGa--UUUCUCG--GGCUG----CCaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 22126 0.71 0.571347
Target:  5'- -gCGCgcccuGGGCCCGGCGGcggCGGCg -3'
miRNA:   3'- aaGCGauuu-CUCGGGCUGCCag-GCCG- -5'
6495 5' -56.7 NC_001847.1 + 22422 0.71 0.560197
Target:  5'- -cCGCgggggcGGGGCCCGagaccacGCGGUCgGGCg -3'
miRNA:   3'- aaGCGauu---UCUCGGGC-------UGCCAGgCCG- -5'
6495 5' -56.7 NC_001847.1 + 22792 0.67 0.826843
Target:  5'- cUUCGCgGAAcAGCUCGuagauGCGGgCCGGCg -3'
miRNA:   3'- -AAGCGaUUUcUCGGGC-----UGCCaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 24221 0.66 0.859318
Target:  5'- -cCGCgguuguacGGGGCCaCGugGGU-CGGCg -3'
miRNA:   3'- aaGCGauu-----UCUCGG-GCugCCAgGCCG- -5'
6495 5' -56.7 NC_001847.1 + 25192 0.66 0.866934
Target:  5'- --aGCUGGccagcGAGCCCcgcgcGCGG-CCGGCa -3'
miRNA:   3'- aagCGAUUu----CUCGGGc----UGCCaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 27291 0.67 0.800583
Target:  5'- -cCGCcgggcGAGAGgaCGGCGGUgCCGGCg -3'
miRNA:   3'- aaGCGau---UUCUCggGCUGCCA-GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 28476 0.73 0.463486
Target:  5'- -cCGCUGGAGGGCCCGcugcugACGccuUCUGGCg -3'
miRNA:   3'- aaGCGAUUUCUCGGGC------UGCc--AGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 29026 0.66 0.859318
Target:  5'- aUCGCgcccAGAGCCgCG-CGcG-CCGGCa -3'
miRNA:   3'- aAGCGauu-UCUCGG-GCuGC-CaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 29171 0.72 0.531116
Target:  5'- -gCGCUGGAGgcGGCCCGccGCGccgCCGGCg -3'
miRNA:   3'- aaGCGAUUUC--UCGGGC--UGCca-GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 29200 0.76 0.313581
Target:  5'- gUUGCUGGGGcuGCCCGACGG-CgGGCu -3'
miRNA:   3'- aAGCGAUUUCu-CGGGCUGCCaGgCCG- -5'
6495 5' -56.7 NC_001847.1 + 29498 0.68 0.734337
Target:  5'- -gCGCUGuucAGCCCGccgGCGGaggugCCGGCg -3'
miRNA:   3'- aaGCGAUuucUCGGGC---UGCCa----GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.