miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6495 5' -56.7 NC_001847.1 + 89 0.66 0.83525
Target:  5'- -cCGCUcu-GGGCuCCGccccugGGUCCGGCg -3'
miRNA:   3'- aaGCGAuuuCUCG-GGCug----CCAGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 1654 0.66 0.851494
Target:  5'- -aCGUgcgccuGCCCGACGG-CCGGg -3'
miRNA:   3'- aaGCGauuucuCGGGCUGCCaGGCCg -5'
6495 5' -56.7 NC_001847.1 + 1912 0.71 0.561208
Target:  5'- -gCGUgcGAGAGCCCGccGCGG-CgCGGCg -3'
miRNA:   3'- aaGCGauUUCUCGGGC--UGCCaG-GCCG- -5'
6495 5' -56.7 NC_001847.1 + 2411 0.69 0.694302
Target:  5'- gUCGUccucccccGAGGGGCCCcccgcGGCGG-CCGGCa -3'
miRNA:   3'- aAGCGa-------UUUCUCGGG-----CUGCCaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 2650 0.68 0.772936
Target:  5'- -cCGCUugcGGcgccuucGCCCGGCGGcucggCCGGCa -3'
miRNA:   3'- aaGCGAuu-UCu------CGGGCUGCCa----GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 2898 0.67 0.782291
Target:  5'- gUCGCcguucGGGCCgGACGGU-CGGUg -3'
miRNA:   3'- aAGCGauuu-CUCGGgCUGCCAgGCCG- -5'
6495 5' -56.7 NC_001847.1 + 3030 0.69 0.694302
Target:  5'- -cCGCgccGAGcAGCUCGGCGGcCCGGa -3'
miRNA:   3'- aaGCGau-UUC-UCGGGCUGCCaGGCCg -5'
6495 5' -56.7 NC_001847.1 + 3134 0.79 0.2085
Target:  5'- --aGCaccGGGAGCCCGGCGGcgCCGGCg -3'
miRNA:   3'- aagCGau-UUCUCGGGCUGCCa-GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 3937 0.66 0.8507
Target:  5'- -gCGCU--GGcGCCgCGGCGGggggggcgccgucUCCGGCg -3'
miRNA:   3'- aaGCGAuuUCuCGG-GCUGCC-------------AGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 4155 0.66 0.851494
Target:  5'- aUCGCUGcaguccucGGGCCCGcuguccuCGGacCCGGCg -3'
miRNA:   3'- aAGCGAUuu------CUCGGGCu------GCCa-GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 5046 0.66 0.851494
Target:  5'- cUCGUccc--AGCCCGcgucGCGGUCgGGCg -3'
miRNA:   3'- aAGCGauuucUCGGGC----UGCCAGgCCG- -5'
6495 5' -56.7 NC_001847.1 + 5355 0.69 0.670863
Target:  5'- gUCGCgc-GGcgcggccgggcccaGGCuCCGGCGGUCCGaGCg -3'
miRNA:   3'- aAGCGauuUC--------------UCG-GGCUGCCAGGC-CG- -5'
6495 5' -56.7 NC_001847.1 + 6677 0.67 0.782291
Target:  5'- --gGCUA---GGCCgCGGCGG-CCGGCc -3'
miRNA:   3'- aagCGAUuucUCGG-GCUGCCaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 9261 0.66 0.864671
Target:  5'- -aCGCUGcgGAGuaacuuguauauaaAGCUCG-CGGUCCcGGCg -3'
miRNA:   3'- aaGCGAU--UUC--------------UCGGGCuGCCAGG-CCG- -5'
6495 5' -56.7 NC_001847.1 + 10566 0.67 0.818258
Target:  5'- -gCGCc---GGGCCCGGCG--CCGGCg -3'
miRNA:   3'- aaGCGauuuCUCGGGCUGCcaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 10915 0.67 0.782291
Target:  5'- cUCGCUcggccGGCCCGAauccuCGG-CCGGCc -3'
miRNA:   3'- aAGCGAuuuc-UCGGGCU-----GCCaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 11312 0.66 0.851494
Target:  5'- -gCGCgcccgccGAGgCCGGCGGgcggCUGGCg -3'
miRNA:   3'- aaGCGauuu---CUCgGGCUGCCa---GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 12079 0.69 0.694302
Target:  5'- -cCGC---GGAGCgCCG-CgGGUCCGGCg -3'
miRNA:   3'- aaGCGauuUCUCG-GGCuG-CCAGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 12341 0.66 0.843469
Target:  5'- cUCGCUGGugagcgguGGGCCUGGCucGGgagcgUCGGCg -3'
miRNA:   3'- aAGCGAUUu-------CUCGGGCUG--CCa----GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 13958 0.67 0.826843
Target:  5'- --gGCUGcggcccguGGGAGCCCGccccUGG-CCGGCa -3'
miRNA:   3'- aagCGAU--------UUCUCGGGCu---GCCaGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.