miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6495 5' -56.7 NC_001847.1 + 135133 0.74 0.392115
Target:  5'- gUCGC-AGGGGGCCCGcGCGG-CgCGGCg -3'
miRNA:   3'- aAGCGaUUUCUCGGGC-UGCCaG-GCCG- -5'
6495 5' -56.7 NC_001847.1 + 134736 0.66 0.86239
Target:  5'- -cCGCccc-GGGCCCucggucucggucggaGcGCGGUCCGGCg -3'
miRNA:   3'- aaGCGauuuCUCGGG---------------C-UGCCAGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 134031 0.66 0.859318
Target:  5'- -gUGCUGGAG-GCCgCGGCGGcgCCGcccGCg -3'
miRNA:   3'- aaGCGAUUUCuCGG-GCUGCCa-GGC---CG- -5'
6495 5' -56.7 NC_001847.1 + 133938 0.73 0.454188
Target:  5'- -gCGCUGGAGcuggcGCCCGACGaGcugCCGGCc -3'
miRNA:   3'- aaGCGAUUUCu----CGGGCUGC-Ca--GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 133480 0.68 0.753854
Target:  5'- -cCGCgcGAcGGCCCGGCcGUCgGGCa -3'
miRNA:   3'- aaGCGauUUcUCGGGCUGcCAGgCCG- -5'
6495 5' -56.7 NC_001847.1 + 133199 0.67 0.782291
Target:  5'- cUCGCUgGAGGAGCUCuGCGccgcgcgCCGGCu -3'
miRNA:   3'- aAGCGA-UUUCUCGGGcUGCca-----GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 133180 0.66 0.851494
Target:  5'- -gCGCUGgcGGcgccGCCCGGCGaGgacgagcgCCGGCg -3'
miRNA:   3'- aaGCGAUuuCU----CGGGCUGC-Ca-------GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 132693 0.67 0.818258
Target:  5'- -cCGCUcgaucGGGAGCUCGcuGCGG-CUGGCg -3'
miRNA:   3'- aaGCGAu----UUCUCGGGC--UGCCaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 132605 0.68 0.752887
Target:  5'- -cCGCcGGAGAGCagcggucCCG-CGGcCCGGCa -3'
miRNA:   3'- aaGCGaUUUCUCG-------GGCuGCCaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 132359 0.69 0.704413
Target:  5'- cUCGCggcccuGGAGgccgCCGGCGGgggcgCCGGCg -3'
miRNA:   3'- aAGCGauu---UCUCg---GGCUGCCa----GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 132311 0.68 0.734337
Target:  5'- -gCGCUGuucAGCCCGccgGCGGaggugCCGGCg -3'
miRNA:   3'- aaGCGAUuucUCGGGC---UGCCa----GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 131984 0.72 0.531116
Target:  5'- -gCGCUGGAGgcGGCCCGccGCGccgCCGGCg -3'
miRNA:   3'- aaGCGAUUUC--UCGGGC--UGCca-GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 131289 0.73 0.463486
Target:  5'- -cCGCUGGAGGGCCCGcugcugACGccuUCUGGCg -3'
miRNA:   3'- aaGCGAUUUCUCGGGC------UGCc--AGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 129230 0.67 0.821713
Target:  5'- -cCGCUAAuGGGCCCGggcgcacaaucugcgACGG-CgCGGCc -3'
miRNA:   3'- aaGCGAUUuCUCGGGC---------------UGCCaG-GCCG- -5'
6495 5' -56.7 NC_001847.1 + 127034 0.66 0.859318
Target:  5'- -cCGCgguuguacGGGGCCaCGugGGU-CGGCg -3'
miRNA:   3'- aaGCGauu-----UCUCGG-GCugCCAgGCCG- -5'
6495 5' -56.7 NC_001847.1 + 126255 0.69 0.704413
Target:  5'- -cUGCUGu-GAGCCCGACucgCUGGCg -3'
miRNA:   3'- aaGCGAUuuCUCGGGCUGccaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 125491 0.68 0.772936
Target:  5'- -gCGC-GAGGAcGCCCGgcugcucgagcgGCGGgCCGGCg -3'
miRNA:   3'- aaGCGaUUUCU-CGGGC------------UGCCaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 125235 0.71 0.560197
Target:  5'- -cCGCgggggcGGGGCCCGagaccacGCGGUCgGGCg -3'
miRNA:   3'- aaGCGauu---UCUCGGGC-------UGCCAGgCCG- -5'
6495 5' -56.7 NC_001847.1 + 124939 0.71 0.571347
Target:  5'- -gCGCgcccuGGGCCCGGCGGcggCGGCg -3'
miRNA:   3'- aaGCGauuu-CUCGGGCUGCCag-GCCG- -5'
6495 5' -56.7 NC_001847.1 + 124568 0.66 0.866934
Target:  5'- -gCGCgcgGGGGGGCcgCCGGCgccgGGcCCGGCg -3'
miRNA:   3'- aaGCGa--UUUCUCG--GGCUG----CCaGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.