miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6495 5' -56.7 NC_001847.1 + 17063 1.1 0.001845
Target:  5'- uUUCGCUAAAGAGCCCGACGGUCCGGCa -3'
miRNA:   3'- -AAGCGAUUUCUCGGGCUGCCAGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 95736 0.81 0.153515
Target:  5'- cUCGCUgcuuucgGAGGAGCCCGGcCGGcgCCGGCu -3'
miRNA:   3'- aAGCGA-------UUUCUCGGGCU-GCCa-GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 3134 0.79 0.2085
Target:  5'- --aGCaccGGGAGCCCGGCGGcgCCGGCg -3'
miRNA:   3'- aagCGau-UUCUCGGGCUGCCa-GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 105947 0.79 0.2085
Target:  5'- --aGCaccGGGAGCCCGGCGGcgCCGGCg -3'
miRNA:   3'- aagCGau-UUCUCGGGCUGCCa-GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 115406 0.78 0.241622
Target:  5'- -cCGCUAAGcGGCCCGcCGcGUCCGGCc -3'
miRNA:   3'- aaGCGAUUUcUCGGGCuGC-CAGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 47560 0.78 0.259771
Target:  5'- -gCGC-GGGGAGCCCGGCGG-CCGcGCa -3'
miRNA:   3'- aaGCGaUUUCUCGGGCUGCCaGGC-CG- -5'
6495 5' -56.7 NC_001847.1 + 112061 0.78 0.259771
Target:  5'- --gGCUAcguaGAGGGCgcccucggcgacCCGGCGGUCCGGCg -3'
miRNA:   3'- aagCGAU----UUCUCG------------GGCUGCCAGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 85220 0.77 0.292465
Target:  5'- -gUGCaAAAGAGCCCGACGaaggcggCCGGCg -3'
miRNA:   3'- aaGCGaUUUCUCGGGCUGCca-----GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 29200 0.76 0.313581
Target:  5'- gUUGCUGGGGcuGCCCGACGG-CgGGCu -3'
miRNA:   3'- aAGCGAUUUCu-CGGGCUGCCaGgCCG- -5'
6495 5' -56.7 NC_001847.1 + 92476 0.75 0.37542
Target:  5'- -aCGUcAAAGAGCCCGGCGG-CCGuGUc -3'
miRNA:   3'- aaGCGaUUUCUCGGGCUGCCaGGC-CG- -5'
6495 5' -56.7 NC_001847.1 + 32320 0.74 0.392115
Target:  5'- gUCGC-AGGGGGCCCGcGCGG-CgCGGCg -3'
miRNA:   3'- aAGCGaUUUCUCGGGC-UGCCaG-GCCG- -5'
6495 5' -56.7 NC_001847.1 + 135133 0.74 0.392115
Target:  5'- gUCGC-AGGGGGCCCGcGCGG-CgCGGCg -3'
miRNA:   3'- aAGCGaUUUCUCGGGC-UGCCaG-GCCG- -5'
6495 5' -56.7 NC_001847.1 + 116664 0.74 0.4359
Target:  5'- -aCGCUGGu-GGCCUgcguGugGGUCCGGCg -3'
miRNA:   3'- aaGCGAUUucUCGGG----CugCCAGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 31125 0.73 0.454188
Target:  5'- -gCGCUGGAGcuggcGCCCGACGaGcugCCGGCc -3'
miRNA:   3'- aaGCGAUUUCu----CGGGCUGC-Ca--GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 115753 0.73 0.454188
Target:  5'- gUCGCcgcGGAG-CCGACGGggagCCGGCu -3'
miRNA:   3'- aAGCGauuUCUCgGGCUGCCa---GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 63412 0.73 0.454188
Target:  5'- cUCGCacGGGAGCgcacgcggcgCCGGCGGgCCGGCg -3'
miRNA:   3'- aAGCGauUUCUCG----------GGCUGCCaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 133938 0.73 0.454188
Target:  5'- -gCGCUGGAGcuggcGCCCGACGaGcugCCGGCc -3'
miRNA:   3'- aaGCGAUUUCu----CGGGCUGC-Ca--GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 28476 0.73 0.463486
Target:  5'- -cCGCUGGAGGGCCCGcugcugACGccuUCUGGCg -3'
miRNA:   3'- aaGCGAUUUCUCGGGC------UGCc--AGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 131289 0.73 0.463486
Target:  5'- -cCGCUGGAGGGCCCGcugcugACGccuUCUGGCg -3'
miRNA:   3'- aaGCGAUUUCUCGGGC------UGCc--AGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 102292 0.72 0.511382
Target:  5'- cUCGCgcgcGAGCgCCG-CGGUCuCGGCg -3'
miRNA:   3'- aAGCGauuuCUCG-GGCuGCCAG-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.