miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6495 5' -56.7 NC_001847.1 + 131984 0.72 0.531116
Target:  5'- -gCGCUGGAGgcGGCCCGccGCGccgCCGGCg -3'
miRNA:   3'- aaGCGAUUUC--UCGGGC--UGCca-GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 29171 0.72 0.531116
Target:  5'- -gCGCUGGAGgcGGCCCGccGCGccgCCGGCg -3'
miRNA:   3'- aaGCGAUUUC--UCGGGC--UGCca-GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 37183 0.72 0.541087
Target:  5'- cUCGCgccgGGAGAGCCCGguGCGaGgcgcCCGGUg -3'
miRNA:   3'- aAGCGa---UUUCUCGGGC--UGC-Ca---GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 22422 0.71 0.560197
Target:  5'- -cCGCgggggcGGGGCCCGagaccacGCGGUCgGGCg -3'
miRNA:   3'- aaGCGauu---UCUCGGGC-------UGCCAGgCCG- -5'
6495 5' -56.7 NC_001847.1 + 125235 0.71 0.560197
Target:  5'- -cCGCgggggcGGGGCCCGagaccacGCGGUCgGGCg -3'
miRNA:   3'- aaGCGauu---UCUCGGGC-------UGCCAGgCCG- -5'
6495 5' -56.7 NC_001847.1 + 104725 0.71 0.561208
Target:  5'- -gCGUgcGAGAGCCCGccGCGG-CgCGGCg -3'
miRNA:   3'- aaGCGauUUCUCGGGC--UGCCaG-GCCG- -5'
6495 5' -56.7 NC_001847.1 + 1912 0.71 0.561208
Target:  5'- -gCGUgcGAGAGCCCGccGCGG-CgCGGCg -3'
miRNA:   3'- aaGCGauUUCUCGGGC--UGCCaG-GCCG- -5'
6495 5' -56.7 NC_001847.1 + 93028 0.71 0.571347
Target:  5'- -aCGCggGAAGcGGCCCccggcgccugGACGGUgCCGGCa -3'
miRNA:   3'- aaGCGa-UUUC-UCGGG----------CUGCCA-GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 22126 0.71 0.571347
Target:  5'- -gCGCgcccuGGGCCCGGCGGcggCGGCg -3'
miRNA:   3'- aaGCGauuu-CUCGGGCUGCCag-GCCG- -5'
6495 5' -56.7 NC_001847.1 + 124939 0.71 0.571347
Target:  5'- -gCGCgcccuGGGCCCGGCGGcggCGGCg -3'
miRNA:   3'- aaGCGauuu-CUCGGGCUGCCag-GCCG- -5'
6495 5' -56.7 NC_001847.1 + 32650 0.71 0.581529
Target:  5'- --aGCUGGAGGGCgaggUgGACGGcgCCGGCg -3'
miRNA:   3'- aagCGAUUUCUCG----GgCUGCCa-GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 122123 0.71 0.601996
Target:  5'- -aCGCUGcAG-GUCgCGACGG-CCGGCg -3'
miRNA:   3'- aaGCGAUuUCuCGG-GCUGCCaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 81177 0.71 0.601996
Target:  5'- -cCGCUcGGAGGGCUcgCGGCGGcgccagCCGGCg -3'
miRNA:   3'- aaGCGA-UUUCUCGG--GCUGCCa-----GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 51381 0.7 0.612267
Target:  5'- -aCGCUcgcGGAGgCCG-CGGUCgCGGCg -3'
miRNA:   3'- aaGCGAuu-UCUCgGGCuGCCAG-GCCG- -5'
6495 5' -56.7 NC_001847.1 + 45621 0.7 0.612267
Target:  5'- gUCGCUGcc--GCCCGGCGGcagCgCGGCg -3'
miRNA:   3'- aAGCGAUuucuCGGGCUGCCa--G-GCCG- -5'
6495 5' -56.7 NC_001847.1 + 124501 0.7 0.622553
Target:  5'- aUgGC-GAGGAGCCCGGCGaGgagCCGGa -3'
miRNA:   3'- aAgCGaUUUCUCGGGCUGC-Ca--GGCCg -5'
6495 5' -56.7 NC_001847.1 + 21688 0.7 0.622553
Target:  5'- aUgGC-GAGGAGCCCGGCGaGgagCCGGa -3'
miRNA:   3'- aAgCGaUUUCUCGGGCUGC-Ca--GGCCg -5'
6495 5' -56.7 NC_001847.1 + 40494 0.7 0.629758
Target:  5'- cUUGCUGGAGGccugcgaaaaaauuGCCCGGCGG-CUGcGCg -3'
miRNA:   3'- aAGCGAUUUCU--------------CGGGCUGCCaGGC-CG- -5'
6495 5' -56.7 NC_001847.1 + 113765 0.7 0.632846
Target:  5'- gUCGCU-GAGAGCCgcccgaGGCGGcCCGaGCc -3'
miRNA:   3'- aAGCGAuUUCUCGGg-----CUGCCaGGC-CG- -5'
6495 5' -56.7 NC_001847.1 + 118226 0.7 0.643139
Target:  5'- aUCGCUGGAGugcaacucccGCCCGcGCGaGaCCGGCg -3'
miRNA:   3'- aAGCGAUUUCu---------CGGGC-UGC-CaGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.