miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6495 5' -56.7 NC_001847.1 + 134031 0.66 0.859318
Target:  5'- -gUGCUGGAG-GCCgCGGCGGcgCCGcccGCg -3'
miRNA:   3'- aaGCGAUUUCuCGG-GCUGCCa-GGC---CG- -5'
6495 5' -56.7 NC_001847.1 + 58242 0.66 0.83525
Target:  5'- -gCGCgc--GAGCUCGGCcggauuagGGUUCGGCg -3'
miRNA:   3'- aaGCGauuuCUCGGGCUG--------CCAGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 55726 0.66 0.843469
Target:  5'- -cCGCccucGGGcGCCaCGGUGGUCCGGCu -3'
miRNA:   3'- aaGCGau--UUCuCGG-GCUGCCAGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 11312 0.66 0.851494
Target:  5'- -gCGCgcccgccGAGgCCGGCGGgcggCUGGCg -3'
miRNA:   3'- aaGCGauuu---CUCgGGCUGCCa---GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 83747 0.66 0.851494
Target:  5'- -gCGCUAuuGGAcucGCCaCGugGGacaCCGGCg -3'
miRNA:   3'- aaGCGAUu-UCU---CGG-GCugCCa--GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 133180 0.66 0.851494
Target:  5'- -gCGCUGgcGGcgccGCCCGGCGaGgacgagcgCCGGCg -3'
miRNA:   3'- aaGCGAUuuCU----CGGGCUGC-Ca-------GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 102902 0.66 0.83525
Target:  5'- -cCGCUcu-GGGCuCCGccccugGGUCCGGCg -3'
miRNA:   3'- aaGCGAuuuCUCG-GGCug----CCAGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 85966 0.66 0.859318
Target:  5'- -cCGCUugcagcGGAcGCCCGGCgcgugaccguGGUCCGcGCg -3'
miRNA:   3'- aaGCGAuu----UCU-CGGGCUG----------CCAGGC-CG- -5'
6495 5' -56.7 NC_001847.1 + 43081 0.66 0.849107
Target:  5'- -gCGCUGcuggcucggcggcgGAGGcGCCCGGaGGcgCCGGCg -3'
miRNA:   3'- aaGCGAU--------------UUCU-CGGGCUgCCa-GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 106750 0.66 0.8507
Target:  5'- -gCGCU--GGcGCCgCGGCGGggggggcgccgucUCCGGCg -3'
miRNA:   3'- aaGCGAuuUCuCGG-GCUGCC-------------AGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 55516 0.66 0.83525
Target:  5'- -cUGCUGgcGGcGCCCGccGCGGggcgaCCGGCg -3'
miRNA:   3'- aaGCGAUuuCU-CGGGC--UGCCa----GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 106968 0.66 0.851494
Target:  5'- aUCGCUGcaguccucGGGCCCGcuguccuCGGacCCGGCg -3'
miRNA:   3'- aAGCGAUuu------CUCGGGCu------GCCa-GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 29026 0.66 0.859318
Target:  5'- aUCGCgcccAGAGCCgCG-CGcG-CCGGCa -3'
miRNA:   3'- aAGCGauu-UCUCGG-GCuGC-CaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 104467 0.66 0.851494
Target:  5'- -aCGUgcgccuGCCCGACGG-CCGGg -3'
miRNA:   3'- aaGCGauuucuCGGGCUGCCaGGCCg -5'
6495 5' -56.7 NC_001847.1 + 127034 0.66 0.859318
Target:  5'- -cCGCgguuguacGGGGCCaCGugGGU-CGGCg -3'
miRNA:   3'- aaGCGauu-----UCUCGG-GCugCCAgGCCG- -5'
6495 5' -56.7 NC_001847.1 + 5046 0.66 0.851494
Target:  5'- cUCGUccc--AGCCCGcgucGCGGUCgGGCg -3'
miRNA:   3'- aAGCGauuucUCGGGC----UGCCAGgCCG- -5'
6495 5' -56.7 NC_001847.1 + 100818 0.66 0.86239
Target:  5'- aUUGCggccgaccucGGCCCgGGCGGcUCCGGCc -3'
miRNA:   3'- aAGCGauuuc-----UCGGG-CUGCC-AGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 78242 0.66 0.859318
Target:  5'- gUUCGCccuGGAGgCCGACGucgCCGcGCa -3'
miRNA:   3'- -AAGCGauuUCUCgGGCUGCca-GGC-CG- -5'
6495 5' -56.7 NC_001847.1 + 79998 0.66 0.851494
Target:  5'- -cCGCUGGGGGGCUCuacgcgcGCGcGUuuGGCg -3'
miRNA:   3'- aaGCGAUUUCUCGGGc------UGC-CAggCCG- -5'
6495 5' -56.7 NC_001847.1 + 134736 0.66 0.86239
Target:  5'- -cCGCccc-GGGCCCucggucucggucggaGcGCGGUCCGGCg -3'
miRNA:   3'- aaGCGauuuCUCGGG---------------C-UGCCAGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.