miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6495 5' -56.7 NC_001847.1 + 51381 0.7 0.612267
Target:  5'- -aCGCUcgcGGAGgCCG-CGGUCgCGGCg -3'
miRNA:   3'- aaGCGAuu-UCUCgGGCuGCCAG-GCCG- -5'
6495 5' -56.7 NC_001847.1 + 37183 0.72 0.541087
Target:  5'- cUCGCgccgGGAGAGCCCGguGCGaGgcgcCCGGUg -3'
miRNA:   3'- aAGCGa---UUUCUCGGGC--UGC-Ca---GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 125235 0.71 0.560197
Target:  5'- -cCGCgggggcGGGGCCCGagaccacGCGGUCgGGCg -3'
miRNA:   3'- aaGCGauu---UCUCGGGC-------UGCCAGgCCG- -5'
6495 5' -56.7 NC_001847.1 + 104725 0.71 0.561208
Target:  5'- -gCGUgcGAGAGCCCGccGCGG-CgCGGCg -3'
miRNA:   3'- aaGCGauUUCUCGGGC--UGCCaG-GCCG- -5'
6495 5' -56.7 NC_001847.1 + 124939 0.71 0.571347
Target:  5'- -gCGCgcccuGGGCCCGGCGGcggCGGCg -3'
miRNA:   3'- aaGCGauuu-CUCGGGCUGCCag-GCCG- -5'
6495 5' -56.7 NC_001847.1 + 93028 0.71 0.571347
Target:  5'- -aCGCggGAAGcGGCCCccggcgccugGACGGUgCCGGCa -3'
miRNA:   3'- aaGCGa-UUUC-UCGGG----------CUGCCA-GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 32650 0.71 0.581529
Target:  5'- --aGCUGGAGGGCgaggUgGACGGcgCCGGCg -3'
miRNA:   3'- aagCGAUUUCUCG----GgCUGCCa-GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 81177 0.71 0.601996
Target:  5'- -cCGCUcGGAGGGCUcgCGGCGGcgccagCCGGCg -3'
miRNA:   3'- aaGCGA-UUUCUCGG--GCUGCCa-----GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 122123 0.71 0.601996
Target:  5'- -aCGCUGcAG-GUCgCGACGG-CCGGCg -3'
miRNA:   3'- aaGCGAUuUCuCGG-GCUGCCaGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 131984 0.72 0.531116
Target:  5'- -gCGCUGGAGgcGGCCCGccGCGccgCCGGCg -3'
miRNA:   3'- aaGCGAUUUC--UCGGGC--UGCca-GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 131289 0.73 0.463486
Target:  5'- -cCGCUGGAGGGCCCGcugcugACGccuUCUGGCg -3'
miRNA:   3'- aaGCGAUUUCUCGGGC------UGCc--AGGCCG- -5'
6495 5' -56.7 NC_001847.1 + 115753 0.73 0.454188
Target:  5'- gUCGCcgcGGAG-CCGACGGggagCCGGCu -3'
miRNA:   3'- aAGCGauuUCUCgGGCUGCCa---GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 105947 0.79 0.2085
Target:  5'- --aGCaccGGGAGCCCGGCGGcgCCGGCg -3'
miRNA:   3'- aagCGau-UUCUCGGGCUGCCa-GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 47560 0.78 0.259771
Target:  5'- -gCGC-GGGGAGCCCGGCGG-CCGcGCa -3'
miRNA:   3'- aaGCGaUUUCUCGGGCUGCCaGGC-CG- -5'
6495 5' -56.7 NC_001847.1 + 85220 0.77 0.292465
Target:  5'- -gUGCaAAAGAGCCCGACGaaggcggCCGGCg -3'
miRNA:   3'- aaGCGaUUUCUCGGGCUGCca-----GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 29200 0.76 0.313581
Target:  5'- gUUGCUGGGGcuGCCCGACGG-CgGGCu -3'
miRNA:   3'- aAGCGAUUUCu-CGGGCUGCCaGgCCG- -5'
6495 5' -56.7 NC_001847.1 + 92476 0.75 0.37542
Target:  5'- -aCGUcAAAGAGCCCGGCGG-CCGuGUc -3'
miRNA:   3'- aaGCGaUUUCUCGGGCUGCCaGGC-CG- -5'
6495 5' -56.7 NC_001847.1 + 135133 0.74 0.392115
Target:  5'- gUCGC-AGGGGGCCCGcGCGG-CgCGGCg -3'
miRNA:   3'- aAGCGaUUUCUCGGGC-UGCCaG-GCCG- -5'
6495 5' -56.7 NC_001847.1 + 133938 0.73 0.454188
Target:  5'- -gCGCUGGAGcuggcGCCCGACGaGcugCCGGCc -3'
miRNA:   3'- aaGCGAUUUCu----CGGGCUGC-Ca--GGCCG- -5'
6495 5' -56.7 NC_001847.1 + 63412 0.73 0.454188
Target:  5'- cUCGCacGGGAGCgcacgcggcgCCGGCGGgCCGGCg -3'
miRNA:   3'- aAGCGauUUCUCG----------GGCUGCCaGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.