miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6496 5' -50.5 NC_001847.1 + 6266 0.66 0.995105
Target:  5'- aCGGUcGUGgUCgAUGUAcucgcgcagGCAGCGGa -3'
miRNA:   3'- aGCCA-CAUgAGgUACAUca-------UGUCGCC- -5'
6496 5' -50.5 NC_001847.1 + 72474 0.66 0.995105
Target:  5'- aCGGcGUGCUgaUgAUGgcGUAcCAGCGGa -3'
miRNA:   3'- aGCCaCAUGA--GgUACauCAU-GUCGCC- -5'
6496 5' -50.5 NC_001847.1 + 122269 0.66 0.994045
Target:  5'- cCGGguccaccGUGCUCCAcGUGGUuauuaggagcccauGCGGCGu -3'
miRNA:   3'- aGCCa------CAUGAGGUaCAUCA--------------UGUCGCc -5'
6496 5' -50.5 NC_001847.1 + 120169 0.66 0.993402
Target:  5'- gCGGUGccuguUGCUCUGgaugGUGGUGCuggccgcgcgAGCGGc -3'
miRNA:   3'- aGCCAC-----AUGAGGUa---CAUCAUG----------UCGCC- -5'
6496 5' -50.5 NC_001847.1 + 3068 0.66 0.993402
Target:  5'- -aGGuUGUGCUC---GUAGUGCAGCa- -3'
miRNA:   3'- agCC-ACAUGAGguaCAUCAUGUCGcc -5'
6496 5' -50.5 NC_001847.1 + 102524 0.66 0.993402
Target:  5'- aCGGcGUcgugcagccGCUCCGUGUcGgccgcgACGGCGGc -3'
miRNA:   3'- aGCCaCA---------UGAGGUACAuCa-----UGUCGCC- -5'
6496 5' -50.5 NC_001847.1 + 116667 0.66 0.993402
Target:  5'- cUGGUGgcCUgCGUGUGGguccgGCGcuGCGGg -3'
miRNA:   3'- aGCCACauGAgGUACAUCa----UGU--CGCC- -5'
6496 5' -50.5 NC_001847.1 + 17318 0.66 0.992388
Target:  5'- cCGGUccGCUCU-UGUGGUGCAG-GGc -3'
miRNA:   3'- aGCCAcaUGAGGuACAUCAUGUCgCC- -5'
6496 5' -50.5 NC_001847.1 + 90992 0.67 0.989166
Target:  5'- -gGGUGUGCUCCAgcgAgacgagagccacgccGUGcCGGCGGa -3'
miRNA:   3'- agCCACAUGAGGUacaU---------------CAU-GUCGCC- -5'
6496 5' -50.5 NC_001847.1 + 7214 0.67 0.983458
Target:  5'- gCGGcUGgGCcgUCCAUGgcGcUGCAGCGGc -3'
miRNA:   3'- aGCC-ACaUG--AGGUACauC-AUGUCGCC- -5'
6496 5' -50.5 NC_001847.1 + 42323 0.67 0.982862
Target:  5'- gCGaGUGUuucgugcugugggcGC-CCGUGUGGcGCGGCGGc -3'
miRNA:   3'- aGC-CACA--------------UGaGGUACAUCaUGUCGCC- -5'
6496 5' -50.5 NC_001847.1 + 18104 0.68 0.979175
Target:  5'- aCGGgGUGCUCCAgc-AGcuccGCGGCGGu -3'
miRNA:   3'- aGCCaCAUGAGGUacaUCa---UGUCGCC- -5'
6496 5' -50.5 NC_001847.1 + 96620 0.68 0.97412
Target:  5'- aCGGUGUACggCCAg--AGcACAGCGc -3'
miRNA:   3'- aGCCACAUGa-GGUacaUCaUGUCGCc -5'
6496 5' -50.5 NC_001847.1 + 30909 0.69 0.968228
Target:  5'- cCGGUGagGCgcgcgCCGgc-GGUGCGGCGGa -3'
miRNA:   3'- aGCCACa-UGa----GGUacaUCAUGUCGCC- -5'
6496 5' -50.5 NC_001847.1 + 24580 0.69 0.961441
Target:  5'- cCGGccGUG-UCCAUGUGGUaAUGGCGGu -3'
miRNA:   3'- aGCCa-CAUgAGGUACAUCA-UGUCGCC- -5'
6496 5' -50.5 NC_001847.1 + 52600 0.7 0.944996
Target:  5'- gCGGUGcGCUUCG-GUAGUGCGGuCGa -3'
miRNA:   3'- aGCCACaUGAGGUaCAUCAUGUC-GCc -5'
6496 5' -50.5 NC_001847.1 + 16016 1.11 0.007109
Target:  5'- cUCGGUGUACUCCAUGUAGUACAGCGGc -3'
miRNA:   3'- -AGCCACAUGAGGUACAUCAUGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.