miRNA display CGI


Results 41 - 60 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 16782 0.7 0.777952
Target:  5'- aGGCcgGGCGAGGC-GUCGUacguggcggUCGCGGa -3'
miRNA:   3'- gUCGuaUUGCUUCGuCAGCG---------GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 17085 0.71 0.739199
Target:  5'- cCGGCAaucuGCGAGGUcggggucggGGUCGuCCUGCGGc -3'
miRNA:   3'- -GUCGUau--UGCUUCG---------UCAGC-GGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 17266 0.66 0.92924
Target:  5'- aAGCAgc-CGcAGGCccAGUCGCCgGUGGc -3'
miRNA:   3'- gUCGUauuGC-UUCG--UCAGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 17583 0.77 0.401967
Target:  5'- aCAGCAgcACGG-GCGGg-GCCCGCGGa -3'
miRNA:   3'- -GUCGUauUGCUuCGUCagCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 17735 0.67 0.918153
Target:  5'- uCGGCGU-ACGAGGCGGccacggccucgCGCUCGCa- -3'
miRNA:   3'- -GUCGUAuUGCUUCGUCa----------GCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 17810 0.71 0.733237
Target:  5'- -cGCGgggGGCGAGGCcgccccccgccgcuaGGUCGCCCaucGCGGc -3'
miRNA:   3'- guCGUa--UUGCUUCG---------------UCAGCGGG---CGCC- -5'
6497 3' -54.3 NC_001847.1 + 17943 0.67 0.918153
Target:  5'- aGGCAUGAUc--GCAGUCGUgugCCGCGc -3'
miRNA:   3'- gUCGUAUUGcuuCGUCAGCG---GGCGCc -5'
6497 3' -54.3 NC_001847.1 + 18214 0.67 0.893045
Target:  5'- gGGC-UGGCGGucucucGGCGGUCGUgCGCGcGg -3'
miRNA:   3'- gUCGuAUUGCU------UCGUCAGCGgGCGC-C- -5'
6497 3' -54.3 NC_001847.1 + 18336 0.69 0.848424
Target:  5'- gCAGCugccgGGCGcagucGCGGUCGCCCaagaucgucgGCGGg -3'
miRNA:   3'- -GUCGua---UUGCuu---CGUCAGCGGG----------CGCC- -5'
6497 3' -54.3 NC_001847.1 + 18974 0.72 0.698904
Target:  5'- cCAGCGcGGCc--GCGG-CGCCCGCGGc -3'
miRNA:   3'- -GUCGUaUUGcuuCGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 19636 0.69 0.805637
Target:  5'- cCGGCGUcGGCGc-GCGGcCGCuuGCGGg -3'
miRNA:   3'- -GUCGUA-UUGCuuCGUCaGCGggCGCC- -5'
6497 3' -54.3 NC_001847.1 + 19792 0.66 0.939341
Target:  5'- uCAGCAUcgucGGCgGAGGCGGUgGCggUgGCGGg -3'
miRNA:   3'- -GUCGUA----UUG-CUUCGUCAgCG--GgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 21121 0.74 0.574746
Target:  5'- gGGCGUGAUGAccccgaucGCGGUCGaCCUGUGGa -3'
miRNA:   3'- gUCGUAUUGCUu-------CGUCAGC-GGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 21297 0.68 0.87173
Target:  5'- gCGGCAUccACGggGacCGGcgCGCCaCGCGGg -3'
miRNA:   3'- -GUCGUAu-UGCuuC--GUCa-GCGG-GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 21919 0.67 0.906083
Target:  5'- aGGCcgcgGGCGAGGCGGagGagaggaCCGCGGc -3'
miRNA:   3'- gUCGua--UUGCUUCGUCagCg-----GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 21970 0.67 0.91224
Target:  5'- gGGCc--GCGgcGcCGGUugcCGCCCGCGGu -3'
miRNA:   3'- gUCGuauUGCuuC-GUCA---GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 22400 0.66 0.92924
Target:  5'- gGGCcgcGGCG-AGCGuGcUCGUCCGCGGg -3'
miRNA:   3'- gUCGua-UUGCuUCGU-C-AGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 22582 0.66 0.948463
Target:  5'- gGGCGcccCGggGCAGg-GCCCGCc- -3'
miRNA:   3'- gUCGUauuGCuuCGUCagCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 23390 0.7 0.796559
Target:  5'- gGGCugggugGGCGGAGCucacuuggcggGGUCGUCgGCGGg -3'
miRNA:   3'- gUCGua----UUGCUUCG-----------UCAGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 23519 0.67 0.91224
Target:  5'- gAGCAc-ACGAGGUcGcCGCCCGUGa -3'
miRNA:   3'- gUCGUauUGCUUCGuCaGCGGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.