miRNA display CGI


Results 21 - 40 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 9733 0.72 0.688661
Target:  5'- cCGGCGgcgcCGggGCAGUCG-CCGuCGGu -3'
miRNA:   3'- -GUCGUauu-GCuuCGUCAGCgGGC-GCC- -5'
6497 3' -54.3 NC_001847.1 + 10732 0.69 0.840241
Target:  5'- cCAGCGaguuUAGgGggGCGGggcCCCGCGGc -3'
miRNA:   3'- -GUCGU----AUUgCuuCGUCagcGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 10743 0.66 0.939341
Target:  5'- cCGGCGUAcagGCGcauuuucuGGCAGagcugCGCgCGCGGg -3'
miRNA:   3'- -GUCGUAU---UGCu-------UCGUCa----GCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 10873 0.7 0.768442
Target:  5'- gGGCGcgGGCGcccAGGCAGacCGCCUGCGGc -3'
miRNA:   3'- gUCGUa-UUGC---UUCGUCa-GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 10903 0.67 0.923819
Target:  5'- gCAGCugGUGGCGgcGCGGUaCuaCCGCGa -3'
miRNA:   3'- -GUCG--UAUUGCuuCGUCA-GcgGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 11827 0.67 0.899683
Target:  5'- aCAGCGc-GCGggGgGGggggCGCCUaGCGGa -3'
miRNA:   3'- -GUCGUauUGCuuCgUCa---GCGGG-CGCC- -5'
6497 3' -54.3 NC_001847.1 + 12080 0.73 0.626509
Target:  5'- -cGCGgAGCGccGCGGguccggCGCCCGCGGc -3'
miRNA:   3'- guCGUaUUGCuuCGUCa-----GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 12673 0.66 0.92924
Target:  5'- aCGGCGacGCGAAGCuGcacugcgCGUCgGCGGg -3'
miRNA:   3'- -GUCGUauUGCUUCGuCa------GCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 13332 0.78 0.360044
Target:  5'- cCGGCAcgGGCGGcgAGCAGgCGCCCGCGa -3'
miRNA:   3'- -GUCGUa-UUGCU--UCGUCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 13420 0.68 0.87173
Target:  5'- gUAGCGcucGCGGAGCGGg-GCCUGCGc -3'
miRNA:   3'- -GUCGUau-UGCUUCGUCagCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 13937 0.66 0.948463
Target:  5'- aCGGCGUcaugcGCGAGcuGCGGcugCgGCCCGUGGg -3'
miRNA:   3'- -GUCGUAu----UGCUU--CGUCa--G-CGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 14026 0.71 0.729245
Target:  5'- aCAGCAUA--GAGGCgcuGGUCGgCCGCGa -3'
miRNA:   3'- -GUCGUAUugCUUCG---UCAGCgGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 14337 0.77 0.401967
Target:  5'- gGGCcgGGCGugguGGCGG-CGCCUGCGGg -3'
miRNA:   3'- gUCGuaUUGCu---UCGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 14688 0.68 0.88617
Target:  5'- aGGCAggAGCGAaaGGC-GUCGUUCGCGa -3'
miRNA:   3'- gUCGUa-UUGCU--UCGuCAGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 14746 1.09 0.003547
Target:  5'- gCAGCAUAACGAAGCAGUCGCCCGCGGc -3'
miRNA:   3'- -GUCGUAUUGCUUCGUCAGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 14807 0.66 0.948463
Target:  5'- gCAGCG--GCGGAGCuGcgcggCGCCCugcgcGCGGu -3'
miRNA:   3'- -GUCGUauUGCUUCGuCa----GCGGG-----CGCC- -5'
6497 3' -54.3 NC_001847.1 + 15071 0.67 0.918153
Target:  5'- cCGGCGgccCGggGa--UCGCCUGCGGc -3'
miRNA:   3'- -GUCGUauuGCuuCgucAGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 15201 0.73 0.595376
Target:  5'- gGGCGUGACgGGAGCcaucGUCGCC-GCGGu -3'
miRNA:   3'- gUCGUAUUG-CUUCGu---CAGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 15223 0.69 0.840241
Target:  5'- -cGCGUauaGACGAAGUAcgCGCCgGCGGc -3'
miRNA:   3'- guCGUA---UUGCUUCGUcaGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 16403 0.77 0.384828
Target:  5'- gCAGCAgccgcGCGggGCgaguguaucucuAGUCGCCCGuCGGg -3'
miRNA:   3'- -GUCGUau---UGCuuCG------------UCAGCGGGC-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.