miRNA display CGI


Results 1 - 20 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 484 0.69 0.829313
Target:  5'- gCAGCGgcggcGGCGggGCGGccgCGCgccaaccccccuguCCGCGGa -3'
miRNA:   3'- -GUCGUa----UUGCuuCGUCa--GCG--------------GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 1001 0.68 0.856404
Target:  5'- gCGGCGgcACGcgcuccaccAGGCcGcCGCCCGCGGc -3'
miRNA:   3'- -GUCGUauUGC---------UUCGuCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 1043 0.72 0.6473
Target:  5'- gCAGCAgcACG-AGC-GUCuCCCGCGGg -3'
miRNA:   3'- -GUCGUauUGCuUCGuCAGcGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 1919 0.66 0.944023
Target:  5'- gGGCAggUGGCGAGGCuuAGcCGgCgCGCGGc -3'
miRNA:   3'- gUCGU--AUUGCUUCG--UCaGCgG-GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 1954 0.68 0.87173
Target:  5'- gAGCuccuccAGCGAgGGCAGcccgCGCCCGCGc -3'
miRNA:   3'- gUCGua----UUGCU-UCGUCa---GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 2071 0.67 0.923819
Target:  5'- gCAGCgGUGGCGgcG-AG-CGcCCCGCGGg -3'
miRNA:   3'- -GUCG-UAUUGCuuCgUCaGC-GGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 3187 0.66 0.92924
Target:  5'- gCGGCAggcGACGGcgcAGCGGUCcgccaGCUCGCGc -3'
miRNA:   3'- -GUCGUa--UUGCU---UCGUCAG-----CGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 3727 0.75 0.524021
Target:  5'- -cGCGUAGCGc-GCGGcCGCCuCGCGGa -3'
miRNA:   3'- guCGUAUUGCuuCGUCaGCGG-GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 3770 0.7 0.796559
Target:  5'- aGGCccu-CGcGGguGUCGCCCGCGc -3'
miRNA:   3'- gUCGuauuGCuUCguCAGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 3803 0.73 0.616116
Target:  5'- aCGGCGUGccggcACGggGC-GUCGgCCGCGa -3'
miRNA:   3'- -GUCGUAU-----UGCuuCGuCAGCgGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 3882 0.71 0.749056
Target:  5'- gCAGCucccAGCGGAGCGagccGUUGCgCGCGGu -3'
miRNA:   3'- -GUCGua--UUGCUUCGU----CAGCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 3902 0.67 0.904822
Target:  5'- gCGGCGUAGCcAGcGCGGgcgccgguugcgCGCCCGCGc -3'
miRNA:   3'- -GUCGUAUUGcUU-CGUCa-----------GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 4164 0.67 0.918153
Target:  5'- cCAGCG-AGCGGgccuuguuuugGGCcGcgCGCCCGUGGg -3'
miRNA:   3'- -GUCGUaUUGCU-----------UCGuCa-GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 4525 0.76 0.475099
Target:  5'- -cGCAcGACGugccucgcGGCGGcCGCCCGCGGg -3'
miRNA:   3'- guCGUaUUGCu-------UCGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 5192 0.67 0.893045
Target:  5'- aCAGCGccGCGAGcGCGGcaagCGCgCCGCGa -3'
miRNA:   3'- -GUCGUauUGCUU-CGUCa---GCG-GGCGCc -5'
6497 3' -54.3 NC_001847.1 + 5660 0.67 0.893045
Target:  5'- cCAGCGgauGCGc-GCcGUCGCgCGCGGc -3'
miRNA:   3'- -GUCGUau-UGCuuCGuCAGCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 6738 0.68 0.879064
Target:  5'- uCAaCAUAGCG-GGC-GUCGUCUGCGGu -3'
miRNA:   3'- -GUcGUAUUGCuUCGuCAGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 6968 0.68 0.87173
Target:  5'- -cGCG--GCGgcGCuucCGCCCGCGGg -3'
miRNA:   3'- guCGUauUGCuuCGucaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 7146 0.66 0.944023
Target:  5'- gCAGCAUcAGCGAAaacccgaucgcGCAGcCGUCgGUGGc -3'
miRNA:   3'- -GUCGUA-UUGCUU-----------CGUCaGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 7423 0.68 0.877615
Target:  5'- gCGGCGgcuugccaaGgcGCAGUCGCUagCGCGGa -3'
miRNA:   3'- -GUCGUauug-----CuuCGUCAGCGG--GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.