miRNA display CGI


Results 1 - 20 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 14746 1.09 0.003547
Target:  5'- gCAGCAUAACGAAGCAGUCGCCCGCGGc -3'
miRNA:   3'- -GUCGUAUUGCUUCGUCAGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 91996 0.81 0.25332
Target:  5'- cCAGCGacuGCGGGcGCAG-CGCCCGCGGg -3'
miRNA:   3'- -GUCGUau-UGCUU-CGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 97163 0.79 0.306659
Target:  5'- cCAGCAUAAUGAGGCAGggcggCGCgCUGCGu -3'
miRNA:   3'- -GUCGUAUUGCUUCGUCa----GCG-GGCGCc -5'
6497 3' -54.3 NC_001847.1 + 118981 0.79 0.306659
Target:  5'- gCGGCc-AACGggGCGGUCGCCC-CGGc -3'
miRNA:   3'- -GUCGuaUUGCuuCGUCAGCGGGcGCC- -5'
6497 3' -54.3 NC_001847.1 + 54682 0.79 0.32127
Target:  5'- gCGGCccGACGGcggcGGCGG-CGCCCGCGGg -3'
miRNA:   3'- -GUCGuaUUGCU----UCGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 13332 0.78 0.360044
Target:  5'- cCGGCAcgGGCGGcgAGCAGgCGCCCGCGa -3'
miRNA:   3'- -GUCGUa-UUGCU--UCGUCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 16403 0.77 0.384828
Target:  5'- gCAGCAgccgcGCGggGCgaguguaucucuAGUCGCCCGuCGGg -3'
miRNA:   3'- -GUCGUau---UGCuuCG------------UCAGCGGGC-GCC- -5'
6497 3' -54.3 NC_001847.1 + 17583 0.77 0.401967
Target:  5'- aCAGCAgcACGG-GCGGg-GCCCGCGGa -3'
miRNA:   3'- -GUCGUauUGCUuCGUCagCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 14337 0.77 0.401967
Target:  5'- gGGCcgGGCGugguGGCGG-CGCCUGCGGg -3'
miRNA:   3'- gUCGuaUUGCu---UCGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 69374 0.77 0.410716
Target:  5'- aAGCGUAcACGGcgcGCAGcuugCGCCCGCGGg -3'
miRNA:   3'- gUCGUAU-UGCUu--CGUCa---GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 47669 0.77 0.419582
Target:  5'- aCGGCcaaguuuACGAAGCGGgcgCGCgCCGCGGg -3'
miRNA:   3'- -GUCGuau----UGCUUCGUCa--GCG-GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 61452 0.76 0.437657
Target:  5'- gGGCGcGGCGAGGCGGUCGCgcagcagcgCCGCGu -3'
miRNA:   3'- gUCGUaUUGCUUCGUCAGCG---------GGCGCc -5'
6497 3' -54.3 NC_001847.1 + 68432 0.76 0.452435
Target:  5'- cCGGCAcguCGAAGCGGccgcagagguccgCGCCCGCGGc -3'
miRNA:   3'- -GUCGUauuGCUUCGUCa------------GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 91559 0.76 0.456172
Target:  5'- cCAGCGccACGcugGGGCGcgcGUCGCCCGCGGc -3'
miRNA:   3'- -GUCGUauUGC---UUCGU---CAGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 102853 0.76 0.475099
Target:  5'- gCGGCGUcGCGggGCcG-CGCCaCGCGGa -3'
miRNA:   3'- -GUCGUAuUGCuuCGuCaGCGG-GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 4525 0.76 0.475099
Target:  5'- -cGCAcGACGugccucgcGGCGGcCGCCCGCGGg -3'
miRNA:   3'- guCGUaUUGCu-------UCGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 95117 0.75 0.49441
Target:  5'- gGGCGcgGACGAGccuGCAGUCGCCgGCGc -3'
miRNA:   3'- gUCGUa-UUGCUU---CGUCAGCGGgCGCc -5'
6497 3' -54.3 NC_001847.1 + 120236 0.75 0.504199
Target:  5'- -cGCG--GCGAGGCAGUCGgCCUGCGc -3'
miRNA:   3'- guCGUauUGCUUCGUCAGC-GGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 118407 0.75 0.514071
Target:  5'- uCAGCGU--CGuGGCcGUCGCCUGCGGu -3'
miRNA:   3'- -GUCGUAuuGCuUCGuCAGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 46309 0.75 0.523023
Target:  5'- cCAGcCGUAGCGccGAGCgcagcacGGcCGCCCGCGGg -3'
miRNA:   3'- -GUC-GUAUUGC--UUCG-------UCaGCGGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.