Results 1 - 20 of 361 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 130511 | 0.66 | 0.934413 |
Target: 5'- aGGCGc-GCGAgcgccGGCGGgcCGCCCGCGc -3' miRNA: 3'- gUCGUauUGCU-----UCGUCa-GCGGGCGCc -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 131323 | 0.66 | 0.92924 |
Target: 5'- aGGCGUGGCccGGCAG-CGCgCCGCc- -3' miRNA: 3'- gUCGUAUUGcuUCGUCaGCG-GGCGcc -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 59811 | 0.66 | 0.938375 |
Target: 5'- aCGGCGgu-CGAgAGCAGcguuugcgccagCGCCuCGCGGg -3' miRNA: 3'- -GUCGUauuGCU-UCGUCa-----------GCGG-GCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 84980 | 0.66 | 0.92924 |
Target: 5'- aCGGCG--GCGAGGCAGaagaccgucaCGCCgGCGa -3' miRNA: 3'- -GUCGUauUGCUUCGUCa---------GCGGgCGCc -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 125213 | 0.66 | 0.92924 |
Target: 5'- gGGCcgcGGCG-AGCGuGcUCGUCCGCGGg -3' miRNA: 3'- gUCGua-UUGCuUCGU-C-AGCGGGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 85838 | 0.66 | 0.92924 |
Target: 5'- -cGCGUuauGCGucGAGCGcGUCGCUggCGCGGa -3' miRNA: 3'- guCGUAu--UGC--UUCGU-CAGCGG--GCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 48748 | 0.66 | 0.92924 |
Target: 5'- gCAGUAUGACucAGCcGcgCGCCCGCc- -3' miRNA: 3'- -GUCGUAUUGcuUCGuCa-GCGGGCGcc -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 134232 | 0.66 | 0.934413 |
Target: 5'- cCGGCGccGGCGGgcGGCGGccggCGgCCGCGGc -3' miRNA: 3'- -GUCGUa-UUGCU--UCGUCa---GCgGGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 114507 | 0.66 | 0.934413 |
Target: 5'- aAGC-UGACGAaagaacugcAGCGGUCGgCgcggCGCGGg -3' miRNA: 3'- gUCGuAUUGCU---------UCGUCAGCgG----GCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 19792 | 0.66 | 0.939341 |
Target: 5'- uCAGCAUcgucGGCgGAGGCGGUgGCggUgGCGGg -3' miRNA: 3'- -GUCGUA----UUG-CUUCGUCAgCG--GgCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 49732 | 0.66 | 0.934413 |
Target: 5'- gGGCGccGGCGAGGCGGUgCGCgugCCGCu- -3' miRNA: 3'- gUCGUa-UUGCUUCGUCA-GCG---GGCGcc -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 127916 | 0.66 | 0.936414 |
Target: 5'- gAGCA-AGCGAgcgcagagagaagagAGCGGgcggCGgCCGCGGc -3' miRNA: 3'- gUCGUaUUGCU---------------UCGUCa---GCgGGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 46869 | 0.66 | 0.92764 |
Target: 5'- cCAGCA-GGCGAAGCGcuccccccguccccGcccggCGCCCGCGc -3' miRNA: 3'- -GUCGUaUUGCUUCGU--------------Ca----GCGGGCGCc -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 38289 | 0.66 | 0.934917 |
Target: 5'- gCGGCAggUGGCGGcAGCGGcaaccguguagccaaCGCCCGCGcGg -3' miRNA: 3'- -GUCGU--AUUGCU-UCGUCa--------------GCGGGCGC-C- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 34523 | 0.66 | 0.934413 |
Target: 5'- aCGGCGccGGCGAuGC-GcCGCCCGcCGGg -3' miRNA: 3'- -GUCGUa-UUGCUuCGuCaGCGGGC-GCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 95926 | 0.66 | 0.934413 |
Target: 5'- aCGGCAUcagcuCGAAGCuGgccaugaccaUCGCCCGCu- -3' miRNA: 3'- -GUCGUAuu---GCUUCGuC----------AGCGGGCGcc -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 88551 | 0.66 | 0.92924 |
Target: 5'- -cGCGUGGCGugaccGCGcUCGCgCGCGGc -3' miRNA: 3'- guCGUAUUGCuu---CGUcAGCGgGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 48407 | 0.66 | 0.939341 |
Target: 5'- gCGGCAaAGCGGGacGC-GUCGCCgGCGc -3' miRNA: 3'- -GUCGUaUUGCUU--CGuCAGCGGgCGCc -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 33469 | 0.66 | 0.938859 |
Target: 5'- gAGCAUGGCucgcuucGAGGCGa-UGUCCGCGGc -3' miRNA: 3'- gUCGUAUUG-------CUUCGUcaGCGGGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 106000 | 0.66 | 0.92924 |
Target: 5'- gCGGCAggcGACGGcgcAGCGGUCcgccaGCUCGCGc -3' miRNA: 3'- -GUCGUa--UUGCU---UCGUCAG-----CGGGCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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