miRNA display CGI


Results 21 - 40 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 34523 0.66 0.934413
Target:  5'- aCGGCGccGGCGAuGC-GcCGCCCGcCGGg -3'
miRNA:   3'- -GUCGUa-UUGCUuCGuCaGCGGGC-GCC- -5'
6497 3' -54.3 NC_001847.1 + 33469 0.66 0.938859
Target:  5'- gAGCAUGGCucgcuucGAGGCGa-UGUCCGCGGc -3'
miRNA:   3'- gUCGUAUUG-------CUUCGUcaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 59347 0.66 0.944023
Target:  5'- cCGGCAUcgggGGCGGAGCGGcggCGgCaGCGGc -3'
miRNA:   3'- -GUCGUA----UUGCUUCGUCa--GCgGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 31222 0.66 0.939341
Target:  5'- gCGGCGUGggcgcGCGaAAGCGGggcgCGCCCGg-- -3'
miRNA:   3'- -GUCGUAU-----UGC-UUCGUCa---GCGGGCgcc -5'
6497 3' -54.3 NC_001847.1 + 46869 0.66 0.92764
Target:  5'- cCAGCA-GGCGAAGCGcuccccccguccccGcccggCGCCCGCGc -3'
miRNA:   3'- -GUCGUaUUGCUUCGU--------------Ca----GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 131323 0.66 0.92924
Target:  5'- aGGCGUGGCccGGCAG-CGCgCCGCc- -3'
miRNA:   3'- gUCGUAUUGcuUCGUCaGCG-GGCGcc -5'
6497 3' -54.3 NC_001847.1 + 95926 0.66 0.934413
Target:  5'- aCGGCAUcagcuCGAAGCuGgccaugaccaUCGCCCGCu- -3'
miRNA:   3'- -GUCGUAuu---GCUUCGuC----------AGCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 14807 0.66 0.948463
Target:  5'- gCAGCG--GCGGAGCuGcgcggCGCCCugcgcGCGGu -3'
miRNA:   3'- -GUCGUauUGCUUCGuCa----GCGGG-----CGCC- -5'
6497 3' -54.3 NC_001847.1 + 38289 0.66 0.934917
Target:  5'- gCGGCAggUGGCGGcAGCGGcaaccguguagccaaCGCCCGCGcGg -3'
miRNA:   3'- -GUCGU--AUUGCU-UCGUCa--------------GCGGGCGC-C- -5'
6497 3' -54.3 NC_001847.1 + 125213 0.66 0.92924
Target:  5'- gGGCcgcGGCG-AGCGuGcUCGUCCGCGGg -3'
miRNA:   3'- gUCGua-UUGCuUCGU-C-AGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 48748 0.66 0.92924
Target:  5'- gCAGUAUGACucAGCcGcgCGCCCGCc- -3'
miRNA:   3'- -GUCGUAUUGcuUCGuCa-GCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 13937 0.66 0.948463
Target:  5'- aCGGCGUcaugcGCGAGcuGCGGcugCgGCCCGUGGg -3'
miRNA:   3'- -GUCGUAu----UGCUU--CGUCa--G-CGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 59811 0.66 0.938375
Target:  5'- aCGGCGgu-CGAgAGCAGcguuugcgccagCGCCuCGCGGg -3'
miRNA:   3'- -GUCGUauuGCU-UCGUCa-----------GCGG-GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 57937 0.66 0.939341
Target:  5'- gCGGCcaAACuGGAGCAG--GCCCGCGa -3'
miRNA:   3'- -GUCGuaUUG-CUUCGUCagCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 93061 0.66 0.939341
Target:  5'- cCGGCAccGCGAGGCcGaugCGCCgcaGCGGc -3'
miRNA:   3'- -GUCGUauUGCUUCGuCa--GCGGg--CGCC- -5'
6497 3' -54.3 NC_001847.1 + 85838 0.66 0.92924
Target:  5'- -cGCGUuauGCGucGAGCGcGUCGCUggCGCGGa -3'
miRNA:   3'- guCGUAu--UGC--UUCGU-CAGCGG--GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 1919 0.66 0.944023
Target:  5'- gGGCAggUGGCGAGGCuuAGcCGgCgCGCGGc -3'
miRNA:   3'- gUCGU--AUUGCUUCG--UCaGCgG-GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 49349 0.66 0.948463
Target:  5'- aCGGCAUucgcgccaAACGucgcGGUGGUCGCCgGCa- -3'
miRNA:   3'- -GUCGUA--------UUGCu---UCGUCAGCGGgCGcc -5'
6497 3' -54.3 NC_001847.1 + 125395 0.66 0.948463
Target:  5'- gGGCGcccCGggGCAGg-GCCCGCc- -3'
miRNA:   3'- gUCGUauuGCuuCGUCagCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 114507 0.66 0.934413
Target:  5'- aAGC-UGACGAaagaacugcAGCGGUCGgCgcggCGCGGg -3'
miRNA:   3'- gUCGuAUUGCU---------UCGUCAGCgG----GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.