miRNA display CGI


Results 1 - 20 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 103856 0.72 0.6473
Target:  5'- gCAGCAgcACG-AGC-GUCuCCCGCGGg -3'
miRNA:   3'- -GUCGUauUGCuUCGuCAGcGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 15201 0.73 0.595376
Target:  5'- gGGCGUGACgGGAGCcaucGUCGCC-GCGGu -3'
miRNA:   3'- gUCGUAUUG-CUUCGu---CAGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 37640 0.73 0.611962
Target:  5'- gCAGCGUGACGuuuacgcucgugcGGCAGcCGCCCaGCGa -3'
miRNA:   3'- -GUCGUAUUGCu------------UCGUCaGCGGG-CGCc -5'
6497 3' -54.3 NC_001847.1 + 43245 0.73 0.616116
Target:  5'- gGGCGcgcgGGCGgcGCGG-CGCCCGgGGg -3'
miRNA:   3'- gUCGUa---UUGCuuCGUCaGCGGGCgCC- -5'
6497 3' -54.3 NC_001847.1 + 3803 0.73 0.616116
Target:  5'- aCGGCGUGccggcACGggGC-GUCGgCCGCGa -3'
miRNA:   3'- -GUCGUAU-----UGCuuCGuCAGCgGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 117452 0.73 0.626509
Target:  5'- uGGaCAUGGCGGAGaCGGUggUGCCCgGCGGa -3'
miRNA:   3'- gUC-GUAUUGCUUC-GUCA--GCGGG-CGCC- -5'
6497 3' -54.3 NC_001847.1 + 12080 0.73 0.626509
Target:  5'- -cGCGgAGCGccGCGGguccggCGCCCGCGGc -3'
miRNA:   3'- guCGUaUUGCuuCGUCa-----GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 80628 0.73 0.636906
Target:  5'- gCGGUugccgAUGGCGAcGGCGG-CGCUCGCGGg -3'
miRNA:   3'- -GUCG-----UAUUGCU-UCGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 131823 0.73 0.636906
Target:  5'- cCGGCGccGGCGGcAGCGG-CGCCCGCGc -3'
miRNA:   3'- -GUCGUa-UUGCU-UCGUCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 33149 0.74 0.574746
Target:  5'- -cGCGUGGCGAgcgcGGCGGUUGCgCCGCu- -3'
miRNA:   3'- guCGUAUUGCU----UCGUCAGCG-GGCGcc -5'
6497 3' -54.3 NC_001847.1 + 21121 0.74 0.574746
Target:  5'- gGGCGUGAUGAccccgaucGCGGUCGaCCUGUGGa -3'
miRNA:   3'- gUCGUAUUGCUu-------CGUCAGC-GGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 114939 0.74 0.574746
Target:  5'- -cGCGUuuGGCGggGCGGggcgcCGCCCcGCGGu -3'
miRNA:   3'- guCGUA--UUGCuuCGUCa----GCGGG-CGCC- -5'
6497 3' -54.3 NC_001847.1 + 68432 0.76 0.452435
Target:  5'- cCGGCAcguCGAAGCGGccgcagagguccgCGCCCGCGGc -3'
miRNA:   3'- -GUCGUauuGCUUCGUCa------------GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 4525 0.76 0.475099
Target:  5'- -cGCAcGACGugccucgcGGCGGcCGCCCGCGGg -3'
miRNA:   3'- guCGUaUUGCu-------UCGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 120236 0.75 0.504199
Target:  5'- -cGCG--GCGAGGCAGUCGgCCUGCGc -3'
miRNA:   3'- guCGUauUGCUUCGUCAGC-GGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 106540 0.75 0.524021
Target:  5'- -cGCGUAGCGc-GCGGcCGCCuCGCGGa -3'
miRNA:   3'- guCGUAUUGCuuCGUCaGCGG-GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 37007 0.74 0.534044
Target:  5'- gCGGCGgcGCGcucGAGCuGaCGCCCGCGGa -3'
miRNA:   3'- -GUCGUauUGC---UUCGuCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 54391 0.74 0.554285
Target:  5'- gGGCGgccgcgGGCGAGGCGGgCGCCgcCGCGGu -3'
miRNA:   3'- gUCGUa-----UUGCUUCGUCaGCGG--GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 76970 0.74 0.564491
Target:  5'- gCGGCuuUGACGAccccgccGCGGUCGCCCGCc- -3'
miRNA:   3'- -GUCGu-AUUGCUu------CGUCAGCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 29446 0.74 0.573719
Target:  5'- gGGCGUGGCgccgcccgcggccGAAGC-GcCGCCCGCGGc -3'
miRNA:   3'- gUCGUAUUG-------------CUUCGuCaGCGGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.