Results 1 - 20 of 361 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 100349 | 0.66 | 0.948463 |
Target: 5'- cCAGCGgccGCGGGucGUAGccgCGCgCCGCGGc -3' miRNA: 3'- -GUCGUau-UGCUU--CGUCa--GCG-GGCGCC- -5' |
|||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 52917 | 0.66 | 0.939341 |
Target: 5'- nGGCA--GCGGcuCGGggCGCCCGCGa -3' miRNA: 3'- gUCGUauUGCUucGUCa-GCGGGCGCc -5' |
|||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 31419 | 0.66 | 0.934413 |
Target: 5'- cCGGCGccGGCGGgcGGCGGccggCGgCCGCGGc -3' miRNA: 3'- -GUCGUa-UUGCU--UCGUCa---GCgGGCGCC- -5' |
|||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 14746 | 1.09 | 0.003547 |
Target: 5'- gCAGCAUAACGAAGCAGUCGCCCGCGGc -3' miRNA: 3'- -GUCGUAUUGCUUCGUCAGCGGGCGCC- -5' |
|||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 29366 | 0.66 | 0.946716 |
Target: 5'- cCGGCGgcgcugcgcgcCGAGGCGGcCGCCgCGCuGGa -3' miRNA: 3'- -GUCGUauu--------GCUUCGUCaGCGG-GCG-CC- -5' |
|||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 86482 | 0.66 | 0.945381 |
Target: 5'- gCGGCAcgGACGAcgaggcugcgggggcGGCGG-CGCCCcgccgccGCGGc -3' miRNA: 3'- -GUCGUa-UUGCU---------------UCGUCaGCGGG-------CGCC- -5' |
|||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 105586 | 0.66 | 0.944023 |
Target: 5'- cCGGCAcGGCGuccguGCGGgggaacucgagCGCCCGCGc -3' miRNA: 3'- -GUCGUaUUGCuu---CGUCa----------GCGGGCGCc -5' |
|||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 66680 | 0.66 | 0.944023 |
Target: 5'- -cGCGcGGCGggGCcc-CGgCCGCGGg -3' miRNA: 3'- guCGUaUUGCuuCGucaGCgGGCGCC- -5' |
|||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 71474 | 0.66 | 0.944023 |
Target: 5'- gGGCAUGGCGGccgcgagcaugAGCAGaUCuUCCGCGu -3' miRNA: 3'- gUCGUAUUGCU-----------UCGUC-AGcGGGCGCc -5' |
|||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 131926 | 0.66 | 0.939341 |
Target: 5'- gCGGCGgcGCgGAGGCAcGUgCGCCgGCGa -3' miRNA: 3'- -GUCGUauUG-CUUCGU-CA-GCGGgCGCc -5' |
|||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 122080 | 0.66 | 0.944023 |
Target: 5'- gCAGCAgcGCGucacgccaaaaaGAGCAG-CGCCUcaGUGGg -3' miRNA: 3'- -GUCGUauUGC------------UUCGUCaGCGGG--CGCC- -5' |
|||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 102232 | 0.66 | 0.944023 |
Target: 5'- gGGCGgGACGGcguccaGGCGcUCGCgCGCGGc -3' miRNA: 3'- gUCGUaUUGCU------UCGUcAGCGgGCGCC- -5' |
|||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 80575 | 0.66 | 0.948463 |
Target: 5'- cCAGCcc-GCGggGCcGUCGUccuCCGCGc -3' miRNA: 3'- -GUCGuauUGCuuCGuCAGCG---GGCGCc -5' |
|||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 102746 | 0.66 | 0.939341 |
Target: 5'- aCGGCc-GACGggGC-GUCGUgCCGCGu -3' miRNA: 3'- -GUCGuaUUGCuuCGuCAGCG-GGCGCc -5' |
|||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 132634 | 0.66 | 0.948463 |
Target: 5'- gCAGCAaagcGCGAGGCGGcC-CUCGCGa -3' miRNA: 3'- -GUCGUau--UGCUUCGUCaGcGGGCGCc -5' |
|||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 119368 | 0.66 | 0.944023 |
Target: 5'- gCGGCGcuugccgccGGCGaAAGCGGgcCGCCCGCGu -3' miRNA: 3'- -GUCGUa--------UUGC-UUCGUCa-GCGGGCGCc -5' |
|||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 42711 | 0.66 | 0.939341 |
Target: 5'- cCAGCccggauuUGGCGcGGCGGgcgGCCgCGCGGg -3' miRNA: 3'- -GUCGu------AUUGCuUCGUCag-CGG-GCGCC- -5' |
|||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 25103 | 0.66 | 0.936414 |
Target: 5'- gAGCA-AGCGAgcgcagagagaagagAGCGGgcggCGgCCGCGGc -3' miRNA: 3'- gUCGUaUUGCU---------------UCGUCa---GCgGGCGCC- -5' |
|||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 22582 | 0.66 | 0.948463 |
Target: 5'- gGGCGcccCGggGCAGg-GCCCGCc- -3' miRNA: 3'- gUCGUauuGCuuCGUCagCGGGCGcc -5' |
|||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 105669 | 0.66 | 0.944023 |
Target: 5'- gAGCGUGccgccucggccGCG-GGCGGcgcuUCGgCCGCGGg -3' miRNA: 3'- gUCGUAU-----------UGCuUCGUC----AGCgGGCGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home