miRNA display CGI


Results 1 - 20 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 134843 0.72 0.688661
Target:  5'- cCGGCGgggcGCGggGaCGG-CGCCCGCGcGg -3'
miRNA:   3'- -GUCGUau--UGCuuC-GUCaGCGGGCGC-C- -5'
6497 3' -54.3 NC_001847.1 + 134693 0.72 0.668041
Target:  5'- aAGC-UAGUGAgAGCGGaCGCCCGCGGu -3'
miRNA:   3'- gUCGuAUUGCU-UCGUCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 134232 0.66 0.934413
Target:  5'- cCGGCGccGGCGGgcGGCGGccggCGgCCGCGGc -3'
miRNA:   3'- -GUCGUa-UUGCU--UCGUCa---GCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 134191 0.72 0.657681
Target:  5'- cCGGCGcAGCGugGAGCGG-CGCgCGCGGg -3'
miRNA:   3'- -GUCGUaUUGC--UUCGUCaGCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 134184 0.68 0.864175
Target:  5'- cCGGCccggGUGcCGgcGCAGUCGUCCcCGGg -3'
miRNA:   3'- -GUCG----UAUuGCuuCGUCAGCGGGcGCC- -5'
6497 3' -54.3 NC_001847.1 + 134142 0.69 0.831863
Target:  5'- cUAGCAgcugGugGggGCAGaaggUGCgUGCGGg -3'
miRNA:   3'- -GUCGUa---UugCuuCGUCa---GCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 134071 0.71 0.709088
Target:  5'- cCGGCGUGgacugggacGCGGAcCAGg-GCCCGCGGg -3'
miRNA:   3'- -GUCGUAU---------UGCUUcGUCagCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 132726 0.66 0.92924
Target:  5'- aAGCuUGGCGAAGCGG-CGCa-GCGa -3'
miRNA:   3'- gUCGuAUUGCUUCGUCaGCGggCGCc -5'
6497 3' -54.3 NC_001847.1 + 132634 0.66 0.948463
Target:  5'- gCAGCAaagcGCGAGGCGGcC-CUCGCGa -3'
miRNA:   3'- -GUCGUau--UGCUUCGUCaGcGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 132564 0.66 0.92924
Target:  5'- gCGGCcgcGGCGGccgcGCAGgCGCCCGCGc -3'
miRNA:   3'- -GUCGua-UUGCUu---CGUCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 132338 0.67 0.893045
Target:  5'- cCGGCGcGGCu-GGCGGccgCGCUCGCGGc -3'
miRNA:   3'- -GUCGUaUUGcuUCGUCa--GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 132179 0.66 0.946716
Target:  5'- cCGGCGgcgcugcgcgcCGAGGCGGcCGCCgCGCuGGa -3'
miRNA:   3'- -GUCGUauu--------GCUUCGUCaGCGG-GCG-CC- -5'
6497 3' -54.3 NC_001847.1 + 131926 0.66 0.939341
Target:  5'- gCGGCGgcGCgGAGGCAcGUgCGCCgGCGa -3'
miRNA:   3'- -GUCGUauUG-CUUCGU-CA-GCGGgCGCc -5'
6497 3' -54.3 NC_001847.1 + 131823 0.73 0.636906
Target:  5'- cCGGCGccGGCGGcAGCGG-CGCCCGCGc -3'
miRNA:   3'- -GUCGUa-UUGCU-UCGUCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 131648 0.68 0.88617
Target:  5'- gAGCGUGACGgcGCcgcuGcCGCCgGuCGGg -3'
miRNA:   3'- gUCGUAUUGCuuCGu---CaGCGGgC-GCC- -5'
6497 3' -54.3 NC_001847.1 + 131323 0.66 0.92924
Target:  5'- aGGCGUGGCccGGCAG-CGCgCCGCc- -3'
miRNA:   3'- gUCGUAUUGcuUCGUCaGCG-GGCGcc -5'
6497 3' -54.3 NC_001847.1 + 130802 0.67 0.918153
Target:  5'- -cGCGgc-CGggGCGGaggCGgCCGCGGc -3'
miRNA:   3'- guCGUauuGCuuCGUCa--GCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 130616 0.66 0.92924
Target:  5'- gGGCGgccgccGCGAGGCAcGUCGUgCGCa- -3'
miRNA:   3'- gUCGUau----UGCUUCGU-CAGCGgGCGcc -5'
6497 3' -54.3 NC_001847.1 + 130511 0.66 0.934413
Target:  5'- aGGCGc-GCGAgcgccGGCGGgcCGCCCGCGc -3'
miRNA:   3'- gUCGUauUGCU-----UCGUCa-GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 129024 0.69 0.805637
Target:  5'- uGGCG--GCGAGGCGcUCGCgCCGCGc -3'
miRNA:   3'- gUCGUauUGCUUCGUcAGCG-GGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.