miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 5' -57.3 NC_001847.1 + 105845 0.75 0.33301
Target:  5'- gCGCcgAGCAGCUCGGCGG-CCCGg---- -3'
miRNA:   3'- -GCG--UCGUCGAGCUGCCaGGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 93759 0.66 0.839494
Target:  5'- gCGCGGCuGCcggCGGCGG-CCCGg---- -3'
miRNA:   3'- -GCGUCGuCGa--GCUGCCaGGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 15945 0.66 0.838673
Target:  5'- cCGCGGCgccgacgAGCUCgccauGACGGUCCCa----- -3'
miRNA:   3'- -GCGUCG-------UCGAG-----CUGCCAGGGcaacau -5'
6497 5' -57.3 NC_001847.1 + 104290 0.66 0.831201
Target:  5'- cCGCGGCAGagccgcagCGGCGGcgCCuCGggGUAg -3'
miRNA:   3'- -GCGUCGUCga------GCUGCCa-GG-GCaaCAU- -5'
6497 5' -57.3 NC_001847.1 + 78204 0.66 0.822725
Target:  5'- uCGCGGCGGCU--GCGGUgcaCCGUcGUGu -3'
miRNA:   3'- -GCGUCGUCGAgcUGCCAg--GGCAaCAU- -5'
6497 5' -57.3 NC_001847.1 + 134041 0.66 0.814075
Target:  5'- cCGCGGCGGCgccgcccgCGgccGCGGcgCCCGgcGUGg -3'
miRNA:   3'- -GCGUCGUCGa-------GC---UGCCa-GGGCaaCAU- -5'
6497 5' -57.3 NC_001847.1 + 134244 0.67 0.796283
Target:  5'- gGCGGCGGCcggcggccgCGGCGGcCCCGg---- -3'
miRNA:   3'- gCGUCGUCGa--------GCUGCCaGGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 88264 0.68 0.71987
Target:  5'- aGCGGC-GCUCGcACGcGUCCCGg---- -3'
miRNA:   3'- gCGUCGuCGAGC-UGC-CAGGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 66882 0.68 0.709879
Target:  5'- uCGCGcGCGGguaCUCGuCGGUCCCGgUGUu -3'
miRNA:   3'- -GCGU-CGUC---GAGCuGCCAGGGCaACAu -5'
6497 5' -57.3 NC_001847.1 + 127753 0.69 0.648858
Target:  5'- -aCAGCAGCUgCGGCGGcuugCCCGgcagGUGg -3'
miRNA:   3'- gcGUCGUCGA-GCUGCCa---GGGCaa--CAU- -5'
6497 5' -57.3 NC_001847.1 + 88880 0.73 0.423396
Target:  5'- gCGCGGCGGCggCGGCGGcUCCCGc---- -3'
miRNA:   3'- -GCGUCGUCGa-GCUGCC-AGGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 96860 0.73 0.450481
Target:  5'- gGCGGCGGUgggCGGCGGUCCgCGcUGg- -3'
miRNA:   3'- gCGUCGUCGa--GCUGCCAGG-GCaACau -5'
6497 5' -57.3 NC_001847.1 + 16852 0.72 0.459719
Target:  5'- uGCAGguGUagUCGACGGgCCCGUcgguUGUAg -3'
miRNA:   3'- gCGUCguCG--AGCUGCCaGGGCA----ACAU- -5'
6497 5' -57.3 NC_001847.1 + 58758 0.7 0.587335
Target:  5'- gGCGGCGGCcgCGACGGUCgCUGgUGc- -3'
miRNA:   3'- gCGUCGUCGa-GCUGCCAG-GGCaACau -5'
6497 5' -57.3 NC_001847.1 + 22679 0.69 0.628318
Target:  5'- aGCAGCgAGCa-GGCGGUCCgCGcUGUAc -3'
miRNA:   3'- gCGUCG-UCGagCUGCCAGG-GCaACAU- -5'
6497 5' -57.3 NC_001847.1 + 59067 0.69 0.63859
Target:  5'- gGCGGCAGCUCGGCuGGcgcgcccucgCCCGgguaGUAg -3'
miRNA:   3'- gCGUCGUCGAGCUG-CCa---------GGGCaa--CAU- -5'
6497 5' -57.3 NC_001847.1 + 14780 1.07 0.00251
Target:  5'- gCGCAGCAGCUCGACGGUCCCGUUGUAg -3'
miRNA:   3'- -GCGUCGUCGAGCUGCCAGGGCAACAU- -5'
6497 5' -57.3 NC_001847.1 + 97441 0.66 0.839494
Target:  5'- aGCAGCAGCgcgcacgUGACgaGGUCCagcgCGUUGa- -3'
miRNA:   3'- gCGUCGUCGa------GCUG--CCAGG----GCAACau -5'
6497 5' -57.3 NC_001847.1 + 1477 0.66 0.831201
Target:  5'- cCGCGGCAGagccgcagCGGCGGcgCCuCGggGUAg -3'
miRNA:   3'- -GCGUCGUCga------GCUGCCa-GG-GCaaCAU- -5'
6497 5' -57.3 NC_001847.1 + 59434 0.66 0.831201
Target:  5'- gGCGGCGGCcCG-CGG-CCCGUg--- -3'
miRNA:   3'- gCGUCGUCGaGCuGCCaGGGCAacau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.