Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6497 | 5' | -57.3 | NC_001847.1 | + | 1477 | 0.66 | 0.831201 |
Target: 5'- cCGCGGCAGagccgcagCGGCGGcgCCuCGggGUAg -3' miRNA: 3'- -GCGUCGUCga------GCUGCCa-GG-GCaaCAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 3032 | 0.75 | 0.33301 |
Target: 5'- gCGCcgAGCAGCUCGGCGG-CCCGg---- -3' miRNA: 3'- -GCG--UCGUCGAGCUGCCaGGGCaacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 12628 | 0.66 | 0.842758 |
Target: 5'- gGCGGCAcuGCUCGuacagccggcuguacACGGUCUCGgagcgGUAc -3' miRNA: 3'- gCGUCGU--CGAGC---------------UGCCAGGGCaa---CAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 14421 | 0.69 | 0.679546 |
Target: 5'- uCGCAGCGGgucgcgacugcCUCGACGG-CgCCGggGUGc -3' miRNA: 3'- -GCGUCGUC-----------GAGCUGCCaG-GGCaaCAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 14780 | 1.07 | 0.00251 |
Target: 5'- gCGCAGCAGCUCGACGGUCCCGUUGUAg -3' miRNA: 3'- -GCGUCGUCGAGCUGCCAGGGCAACAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 15945 | 0.66 | 0.838673 |
Target: 5'- cCGCGGCgccgacgAGCUCgccauGACGGUCCCa----- -3' miRNA: 3'- -GCGUCG-------UCGAG-----CUGCCAGGGcaacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 16852 | 0.72 | 0.459719 |
Target: 5'- uGCAGguGUagUCGACGGgCCCGUcgguUGUAg -3' miRNA: 3'- gCGUCguCG--AGCUGCCaGGGCA----ACAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 17668 | 0.66 | 0.822725 |
Target: 5'- aCGuCGGCGGCUCG-CGGUCCg------ -3' miRNA: 3'- -GC-GUCGUCGAGCuGCCAGGgcaacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 22679 | 0.69 | 0.628318 |
Target: 5'- aGCAGCgAGCa-GGCGGUCCgCGcUGUAc -3' miRNA: 3'- gCGUCG-UCGagCUGCCAGG-GCaACAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 24941 | 0.69 | 0.648858 |
Target: 5'- -aCAGCAGCUgGGCGGcuugCCCGgcagGUGg -3' miRNA: 3'- gcGUCGUCGAgCUGCCa---GGGCaa--CAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 31228 | 0.66 | 0.814075 |
Target: 5'- cCGCGGCGGCgccgcccgCGgccGCGGcgCCCGgcGUGg -3' miRNA: 3'- -GCGUCGUCGa-------GC---UGCCa-GGGCaaCAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 31431 | 0.67 | 0.796283 |
Target: 5'- gGCGGCGGCcggcggccgCGGCGGcCCCGg---- -3' miRNA: 3'- gCGUCGUCGa--------GCUGCCaGGGCaacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 33584 | 0.69 | 0.648858 |
Target: 5'- gCGCGGCccgGGCUCGGCGG-CCUGcgGa- -3' miRNA: 3'- -GCGUCG---UCGAGCUGCCaGGGCaaCau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 42386 | 0.67 | 0.777895 |
Target: 5'- uGCAGCGGCUgcaCGGCgaGGUCCUGg---- -3' miRNA: 3'- gCGUCGUCGA---GCUG--CCAGGGCaacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 43675 | 0.69 | 0.63859 |
Target: 5'- cCGCAGguGCUCGACGacCUCG-UGUGg -3' miRNA: 3'- -GCGUCguCGAGCUGCcaGGGCaACAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 47716 | 0.67 | 0.74838 |
Target: 5'- gCGCAGCAGCUCuucgagcgcggcgGGCGGggcCCCGc---- -3' miRNA: 3'- -GCGUCGUCGAG-------------CUGCCa--GGGCaacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 52918 | 0.67 | 0.749349 |
Target: 5'- gGCAGCGGCUCGG-GGcgCCCGc---- -3' miRNA: 3'- gCGUCGUCGAGCUgCCa-GGGCaacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 58758 | 0.7 | 0.587335 |
Target: 5'- gGCGGCGGCcgCGACGGUCgCUGgUGc- -3' miRNA: 3'- gCGUCGUCGa-GCUGCCAG-GGCaACau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 59067 | 0.69 | 0.63859 |
Target: 5'- gGCGGCAGCUCGGCuGGcgcgcccucgCCCGgguaGUAg -3' miRNA: 3'- gCGUCGUCGAGCUG-CCa---------GGGCaa--CAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 59434 | 0.66 | 0.831201 |
Target: 5'- gGCGGCGGCcCG-CGG-CCCGUg--- -3' miRNA: 3'- gCGUCGUCGaGCuGCCaGGGCAacau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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